Click here to switch to the map view.

The map label for this gene is yjjV [C]

Identifier: 16272055

GI number: 16272055

Start: 87148

End: 87936

Strand: Direct

Name: yjjV [C]

Synonym: HI0081

Alternate gene names: 16272055

Gene position: 87148-87936 (Clockwise)

Preceding gene: 16272054

Following gene: 16272056

Centisome position: 4.76

GC content: 38.78

Gene sequence:

>789_bases
ATGCACTTCTTCGACACTCACACGCATCTTAATTATCTCCAACAATTTACTGGGGAACCGTTGTCACAGCTTATTGATAA
TGCTAAGCAAGCCGATGTGCAAAAAATACTGGTTGTGGCGGTGAAAGAAGCTGATTTTAAAACAATCCAAAATATGACCG
CACTTTTTCCTGATAATTTGTGCTATGGGCTTGGGCTCCATCCTCTTTATATTCAAGAACACGCCGAAAATGATTTGATT
CTGTTAGAACAAGCCTTAAAAAATCGTGATACAAATTGCACGGCAGTGGCAGAAATTGGTTTGGAACGCGCGATTCCCGA
TTTGCTCACCGATGAACTTTGGGCAAAACAATGTCATTTTTTTGAAAGCCAACTTTATTTGGCAAAACAATTTAATTTAC
CCGTCAATATTCACAGTCGAAAAACCCATGATCAAATTTTTACTTTTTTAAAACGTATTCCATTATCTAAACTTGGCGTG
GTACATGGTTTTTCAGGAAGTTACGATCAAGCAAAACGCTTTGTTGATTTAGGCTATAAAATCGGAGTTGGCGGCACTAT
CACTTATGAACGAGCCAATAAAACTCGTCAAGCAATCGCGAAGTTGCCGCTTGATGCCTTAGTGTTGGAAACAGACAGCC
CAGATATGCCTGTATTTGGTTTTCAAGGCCAACCTAATCGACCAGAACGTATTGTGGAAAGTTTTAAAGCTCTTTGCACC
TTAAGAAATGAACCTGCTGAATTGATTAAAAAACTTACATGGGAAAATGCTTGCCAGATTTTTTCTTGA

Upstream 100 bases:

>100_bases
GATCATCATCGAAAGATGAGTTTTTAAACGCCATTGAGCGATGAATCCCCTGATTAGCGATAATTAGGGGATTTTTTATA
GAATTTAGATAAAGATATTT

Downstream 100 bases:

>100_bases
TCCACGTCACATTACTGAAATTATTTTGAATTAAATACTAGAAAAAAGAAACTGGCATAATAATATCCGCCTCGTAGAAA
GTTTTTCTCAACACACAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MHFFDTHTHLNYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQNMTALFPDNLCYGLGLHPLYIQEHAENDLI
LLEQALKNRDTNCTAVAEIGLERAIPDLLTDELWAKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRIPLSKLGV
VHGFSGSYDQAKRFVDLGYKIGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCT
LRNEPAELIKKLTWENACQIFS

Sequences:

>Translated_262_residues
MHFFDTHTHLNYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQNMTALFPDNLCYGLGLHPLYIQEHAENDLI
LLEQALKNRDTNCTAVAEIGLERAIPDLLTDELWAKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRIPLSKLGV
VHGFSGSYDQAKRFVDLGYKIGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCT
LRNEPAELIKKLTWENACQIFS
>Mature_262_residues
MHFFDTHTHLNYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQNMTALFPDNLCYGLGLHPLYIQEHAENDLI
LLEQALKNRDTNCTAVAEIGLERAIPDLLTDELWAKQCHFFESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRIPLSKLGV
VHGFSGSYDQAKRFVDLGYKIGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCT
LRNEPAELIKKLTWENACQIFS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=27.8195488721804, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=27.8195488721804, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=27.3062730627306, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=26.5384615384615, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI225903424, Length=226, Percent_Identity=27.4336283185841, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=48.2758620689655, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1787342, Length=267, Percent_Identity=25.8426966292135, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=271, Percent_Identity=26.5682656826568, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=27.1698113207547, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648690, Length=242, Percent_Identity=24.7933884297521, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24586117, Length=202, Percent_Identity=29.7029702970297, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221330018, Length=208, Percent_Identity=30.2884615384615, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y081_HAEIN (P44500)

Other databases:

- EMBL:   L42023
- PIR:   A64142
- RefSeq:   NP_438254.1
- ProteinModelPortal:   P44500
- SMR:   P44500
- GeneID:   950980
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0081
- NMPDR:   fig|71421.1.peg.80
- TIGR:   HI_0081
- HOGENOM:   HBG629833
- OMA:   GGVIHAF
- ProtClustDB:   CLSK870306
- BioCyc:   HINF71421:HI_0081-MONOMER
- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- PANTHER:   PTHR10060
- PIRSF:   PIRSF005902

Pfam domain/function: PF01026 TatD_DNase

EC number: 3.1.21.-

Molecular weight: Translated: 29790; Mature: 29790

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01137 TATD_1; PS01090 TATD_2; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFFDTHTHLNYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQNMTALFPDNL
CCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
CYGLGLHPLYIQEHAENDLILLEQALKNRDTNCTAVAEIGLERAIPDLLTDELWAKQCHF
HHHCCCCCEEEHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRIPLSKLGVVHGFSGSYDQAKRFVDLGYK
HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHHHCEEECCCCCHHHHHHHHHCCEE
IGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCT
ECCCCEEEEHHHHHHHHHHHHCCHHHEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHH
LRNEPAELIKKLTWENACQIFS
HCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHFFDTHTHLNYLQQFTGEPLSQLIDNAKQADVQKILVVAVKEADFKTIQNMTALFPDNL
CCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
CYGLGLHPLYIQEHAENDLILLEQALKNRDTNCTAVAEIGLERAIPDLLTDELWAKQCHF
HHHCCCCCEEEHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FESQLYLAKQFNLPVNIHSRKTHDQIFTFLKRIPLSKLGVVHGFSGSYDQAKRFVDLGYK
HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHHHCEEECCCCCHHHHHHHHHCCEE
IGVGGTITYERANKTRQAIAKLPLDALVLETDSPDMPVFGFQGQPNRPERIVESFKALCT
ECCCCEEEEHHHHHHHHHHHHCCHHHEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHH
LRNEPAELIKKLTWENACQIFS
HCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800