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The map label for this gene is yidA [C]

Identifier: 16271979

GI number: 16271979

Start: 3050

End: 3838

Strand: Reverse

Name: yidA [C]

Synonym: HI0003

Alternate gene names: 16271979

Gene position: 3838-3050 (Counterclockwise)

Preceding gene: 16271980

Following gene: NA

Centisome position: 0.21

GC content: 36.63

Gene sequence:

>789_bases
ATGATGTATAAAGCAGTATTTAGTGATTTTAATGGCACCTTATTAACCTCTCAACATACAATTTCCCCTCGAACTGTTGT
GGTAATTAAGCGTTTAACGGCGAATGGCATTCCTTTTGTGCCAATTTCGGCGCGTTCTCCTTTAGGTATTTTGCCTTATT
GGAAACAGCTTGAAACGAATAATGTACTTGTTGCATTTAGTGGTGCGCTTATTTTGAACCAAAATCTCGAACCAATTTAT
AGCGTACAAATTGAGCCAAAAGATATTTTAGAGATTAATACTGTTTTGGCGGAACATCCTTTGCTTGGCGTGAATTATTA
TACAAATAATGATTGCCATGCGCGCGATGTAGAAAATAAATGGGTGATTTATGAACGCAGCGTGACCAAAATTGAGATTC
ATCCTTTTGATGAAGTAGCGACACGTTCGCCACATAAAATTCAAATTATTGGGGAAGCAGAAGAAATCATTGAGATTGAA
GTTCTTTTAAAGGAAAAATTTCCACATTTAAGTATTTGTCGTTCCCACGCTAATTTTTTAGAGGTAATGCACAAGAGTGC
AACCAAAGGAAGTGCGGTGCGTTTTTTGGAAGATTATTTTGGCGTACAAACTAATGAAGTGATTGCATTTGGCGATAATT
TTAATGATCTGGATATGCTAGAACATGTGGGGCTTGGTGTTGCAATGGGAAATGCGCCAAATGAAATTAAACAAGCTGCA
AATGTGGTTACGGCAACCAATAATGAAGATGGACTTGCATTGATTTTAGAAGAAAAATTTCCTGAATAA

Upstream 100 bases:

>100_bases
CGATGAAGCGGAAGAAATGGAAAGTTTAGAAACCCAAATTATGCAAGGATTAGGCTTTGATGATCCTTATCTAGCAGAGA
AATAATCTTTATTCGGAGTA

Downstream 100 bases:

>100_bases
TTAGAAAAGAAAGGCTCTCAATTGAGAGCCTTTTAGCTATGCTTCTTGTGAATGATACATTGCTTCAATTTGCTTGCGAT
AACGTTCTAAAATCACTTTT

Product: haloacid dehalogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MMYKAVFSDFNGTLLTSQHTISPRTVVVIKRLTANGIPFVPISARSPLGILPYWKQLETNNVLVAFSGALILNQNLEPIY
SVQIEPKDILEINTVLAEHPLLGVNYYTNNDCHARDVENKWVIYERSVTKIEIHPFDEVATRSPHKIQIIGEAEEIIEIE
VLLKEKFPHLSICRSHANFLEVMHKSATKGSAVRFLEDYFGVQTNEVIAFGDNFNDLDMLEHVGLGVAMGNAPNEIKQAA
NVVTATNNEDGLALILEEKFPE

Sequences:

>Translated_262_residues
MMYKAVFSDFNGTLLTSQHTISPRTVVVIKRLTANGIPFVPISARSPLGILPYWKQLETNNVLVAFSGALILNQNLEPIY
SVQIEPKDILEINTVLAEHPLLGVNYYTNNDCHARDVENKWVIYERSVTKIEIHPFDEVATRSPHKIQIIGEAEEIIEIE
VLLKEKFPHLSICRSHANFLEVMHKSATKGSAVRFLEDYFGVQTNEVIAFGDNFNDLDMLEHVGLGVAMGNAPNEIKQAA
NVVTATNNEDGLALILEEKFPE
>Mature_262_residues
MMYKAVFSDFNGTLLTSQHTISPRTVVVIKRLTANGIPFVPISARSPLGILPYWKQLETNNVLVAFSGALILNQNLEPIY
SVQIEPKDILEINTVLAEHPLLGVNYYTNNDCHARDVENKWVIYERSVTKIEIHPFDEVATRSPHKIQIIGEAEEIIEIE
VLLKEKFPHLSICRSHANFLEVMHKSATKGSAVRFLEDYFGVQTNEVIAFGDNFNDLDMLEHVGLGVAMGNAPNEIKQAA
NVVTATNNEDGLALILEEKFPE

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family

Homologues:

Organism=Escherichia coli, GI2367265, Length=275, Percent_Identity=30.5454545454545, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI48994981, Length=240, Percent_Identity=25, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786982, Length=276, Percent_Identity=23.5507246376812, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081741, Length=251, Percent_Identity=23.9043824701195, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y003_HAEIN (P44447)

Other databases:

- EMBL:   L42023
- PIR:   I64139
- RefSeq:   NP_438176.1
- ProteinModelPortal:   P44447
- SMR:   P44447
- GeneID:   950898
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0003
- NMPDR:   fig|71421.1.peg.3
- TIGR:   HI_0003
- HOGENOM:   HBG728500
- OMA:   FVKSAPH
- ProtClustDB:   CLSK892350
- BioCyc:   HINF71421:HI_0003-MONOMER
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150
- Gene3D:   G3DSA:3.40.50.1000
- TIGRFAMs:   TIGR00099
- TIGRFAMs:   TIGR01484

Pfam domain/function: PF00702 Hydrolase; SSF56784 SSF56784

EC number: NA

Molecular weight: Translated: 29354; Mature: 29354

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS01228 COF_1; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYKAVFSDFNGTLLTSQHTISPRTVVVIKRLTANGIPFVPISARSPLGILPYWKQLETN
CCCHHHHCCCCCEEEECCCCCCCEEEEEEEEHHCCCCCEEEECCCCCCCCCCCHHHCCCC
NVLVAFSGALILNQNLEPIYSVQIEPKDILEINTVLAEHPLLGVNYYTNNDCHARDVENK
CEEEEEECEEEECCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCE
WVIYERSVTKIEIHPFDEVATRSPHKIQIIGEAEEIIEIEVLLKEKFPHLSICRSHANFL
EEEEECCEEEEEECCCHHHHCCCCCEEEEEECCCCEEEEEEEEHHCCCHHHHHHHHHHHH
EVMHKSATKGSAVRFLEDYFGVQTNEVIAFGDNFNDLDMLEHVGLGVAMGNAPNEIKQAA
HHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCEEEECCCCHHHHHHH
NVVTATNNEDGLALILEEKFPE
CEEEECCCCCCEEEEEECCCCC
>Mature Secondary Structure
MMYKAVFSDFNGTLLTSQHTISPRTVVVIKRLTANGIPFVPISARSPLGILPYWKQLETN
CCCHHHHCCCCCEEEECCCCCCCEEEEEEEEHHCCCCCEEEECCCCCCCCCCCHHHCCCC
NVLVAFSGALILNQNLEPIYSVQIEPKDILEINTVLAEHPLLGVNYYTNNDCHARDVENK
CEEEEEECEEEECCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCE
WVIYERSVTKIEIHPFDEVATRSPHKIQIIGEAEEIIEIEVLLKEKFPHLSICRSHANFL
EEEEECCEEEEEECCCHHHHCCCCCEEEEEECCCCEEEEEEEEHHCCCHHHHHHHHHHHH
EVMHKSATKGSAVRFLEDYFGVQTNEVIAFGDNFNDLDMLEHVGLGVAMGNAPNEIKQAA
HHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCEEEECCCCHHHHHHH
NVVTATNNEDGLALILEEKFPE
CEEEECCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023