| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082852
Identifier: 99082852
GI number: 99082852
Start: 3180522
End: 3181370
Strand: Direct
Name: 99082852
Synonym: TM1040_3012
Alternate gene names: NA
Gene position: 3180522-3181370 (Clockwise)
Preceding gene: 99082847
Following gene: 99082856
Centisome position: 99.36
GC content: 59.01
Gene sequence:
>849_bases ATGAGTGACGACCGTAAGAGCCGCTTTCCCGATGCCCGCGCTGATCGATACCGCGCCGAACATGTTCCCGTGACGCCACA AACGCAGTCGCCTGTCTACCAGCTTGCTTTTGCCGATGAAGGGTTTCTGTGCCGAGAAGAACTGCGTCCGGTGCGCTTGC AGCTGGAGCTTCTGAAGCCGCAGCTGATGCTGGACGAAAAAGGCGTCGAGAGCACGGTCGTGATGTTTGGCGGGGCGCGC ATCCCCGCCCCGCGTGACAAGGACAAGGCGCGGACACAGACCCTGGCCGACCTTAGTCATTTCTACGACGAAGCGCGTAC GTTCGCGCAGAAGATGACCGAAAAATCCAAGGCAAGTGGCGGTCGGCGTCATGTCGTCGTGACCGGTGGCGGTCCCGGTG TCATGGAAGCTGGAAACCGGGGCGCCGTGGATGCGGGCGGCGAGTCGATTGGCCTCAATATCGTGTTGCCGCACGAACAG GCGCCCAACGAATACGTCACGCCGGAGCTCTGTTTCAATTTCCACTATTTTGCGATCCGCAAGATGCATTTCCTGATGCG TGCTGAGGCGATTTGCGTTTTCCCTGGTGGCTTTGGCACCCTTGATGAGCTGTTTGAGGCCCTGACGCTGATCCAGACCG GGCGCATGGAACCTGTCCCATTCTTGCTGTTTGGCCGCAGTTTCTGGGAGAAGATCATCAATTGGGAGGCCCTGGCCGAC GCGGGAACAATTTCAGACCAGGACCTTGATCTGTTCAAGTTCGTGGAAAGCGCGGATGAGGCAATCGCAGCGATCGAGGC GTGGAACCCTGTACCTGCGCGTCAAAACCTGCCCGGTCGTGATCGTTAG
Upstream 100 bases:
>100_bases GCAAGGGGATTGATGGTGCGATTTGAGCACTGGCCGCAAAGGGGTGCGCAGGCTATGACAGGGTCTAACCTTCTGCACTG AAGAATAGGCAAGATTTGAT
Downstream 100 bases:
>100_bases GACCCGCGCAGAGATCGTTTTCTTACCTCGGCATGCTTTAAACGGTAGCGCGTCGGGCCCCTTGGGCCCGGCGCGCGGGT CCGCCCGACAGGACGGAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVESTVVMFGGAR IPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQ APNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR
Sequences:
>Translated_282_residues MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVESTVVMFGGAR IPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQ APNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR >Mature_281_residues SDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVESTVVMFGGARI PAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQA PNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALADA GTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31514; Mature: 31383
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKP CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEHHHCCCCEEHHHHHCC QLMLDEKGVESTVVMFGGARIPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASG HHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQAPNEYVTPELCFNFHYFAIR CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH KMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD HHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHC AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKP CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEHHHCCCCEEHHHHHCC QLMLDEKGVESTVVMFGGARIPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASG HHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQAPNEYVTPELCFNFHYFAIR CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH KMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD HHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHC AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA