| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082792
Identifier: 99082792
GI number: 99082792
Start: 3120174
End: 3122588
Strand: Direct
Name: 99082792
Synonym: TM1040_2952
Alternate gene names: NA
Gene position: 3120174-3122588 (Clockwise)
Preceding gene: 99082791
Following gene: 99082793
Centisome position: 97.48
GC content: 56.6
Gene sequence:
>2415_bases ATGATATCGCGAGCAATCGCATTTGCGGCTGCAGTAGTGGTCGCTGGATATGCAGAAGCACAAACAATCGTAACACGCTC GGGAGAGCACGACACATTCACCCGCTTGGTGATGCGTCTACCCGACGGTATCGAGTGGTCACTGACCCAAAATGAAAACG TCGCGACCGTCAATGTTGGGTCTCCGACAGCTGTCTTTAACACGCAATCCGTATTCGATCTCATTCCCCGTACCCGCATT CGCTCCGTGAGCCAGGCTGCCCCAGGTCAACCACTGCGCATTGATCTCGGGTGTGAGTGTAGCGTCGATTATTACCAGCA GTCCGATGGCTACTTGGTGATCGACGTGCGCGAGGGGCGCTCGCTGACTCTGGCAGAACCGTCCGATCGTGCAAGCCTGC CGCTTACTTTTCCGAGCGCTCGCGCAGGGCGTGACTTCAACATTGACTCGCGTGATCTGGCCAGTGCGCGCGTTGCAATG GGTCTTGAAGATGCAGTTGAGCAGACATTCGGATCCGCGAAGCGACAACCGCTCCATACGGGTCCGGTAGAGATCCCTTT GCTCGGTGATGAAACTGGTATTGCGCCTGCGCAAAAGGCCGAAGATGTCGCCGTGCCGGACACCAAAGACGACGATGACA AGCCTTCGCCTGAGACACTGACTGCAGATTCAAGTCTGCTCATGGATCTTGAGGAGAATCGTCGCGCGGCGTTGGTCAAC GATACCGAGACACGGTTGCTACAACAAATCGGGCGTGCCAGCGATCAGGGTCTTCTCAACCCGAATGAACAGGGCCAAGC GGCGCTTCAACTCGACCCTTTGGGGAACGAGAATAGGCCTCTCAATCCTCTGGACAATATGTCCGTTACATCTGCAATTG ATCGTGAAACAGGTCTTTTTGCAGTATCCAATGGTCGTGATGAAGCGGCATCTCATTGTATTCCAGACCTTGAAATAGCG GTTTACAAATGGGGTAAGGAAACACCATTTGCAGAGCAGATTGGCGCCTTGAGAAACGAAATTCTCGGTGAGTTCGATCA ACTCAATCGCGATGCGACCCTGAAACTCGCGAGGACATACCTCTATTTTGGCTTTGGCGCGGAGGCGGTTTCGACGCTTC ACATGCTCTCCGAGAGCAATCTCAAGCCGCGCTCGCGTGAGATCATGACGACAATTGCGCAGATCCTCGATGGGGAAGAA CTTCCTGTAAATACGATTTTTTCCGGCCAGCAAACCTGTAGTGGCGGCGCGGCCTTCTGGGCTGCGATGGCGGACGGCGT CGTTAAAAAGGGGGCAAACTCTGACGCAATTCAGCAGACCTTCGCACGTTTGCCCGCGCATCTGCGTGTCCAACTTGGTG CGCGCATGACCAGGCTCTTTGCTGAAGCCGGAGACCCAAGCGTTGCAAAAGCGACCTTGCGGTCTGTTGATCGCACCGGG GTCGAAGGGGTGCCGGATCGCAACCTGGCAGAGGCGGCAATTGCGGAGCTTGACGGTGACACGGATGCGGTGGCTCGCAA CCTCACAGAAGAAGTTGCGGAGCAAAGCCAAAACACCCCGCTCGCGCTCATCGAACTTGTCGAATTGAGTTATGCGGAAC GTCGGGCGCTTTCCCCGGATGTTCCGGATCTGACGGCCTCCTACGAGCTTGAGTACCGAGACGCCGCATTGGGTGCAGAA CTGCGAAAAGCCGAAGTTATGGCGTTGGCGCTGACCGGTAGTTTTGACGCGGCATTCAAAAAGAGTGCCAAGCTTGAAGA GCGCGATGGGCTCATGGCGCGAGATTCTGTAAATACCCCGCTGATGACACTGCTTACTGAGAACGCGGATGACGTGACCT TCTTGAAGTACGCTCTGATCTTTGCTCACGAGGCAGGTGCGACGCGTGCGGGCCAGGTTGGGGACATCATTGCGCGCCGG TTGCTTGATCTGGGTTTTGCAGAGCAGGCGGAGATGATCCTGCGCAAAATGAGCCTCGAACCTCAAAATGAAGACCGCCG CATGATGAGTGCAGAGGCGCATCTGCAATTGGACCAACCCCAACGCGCCCTGGTGGAACTGATGGGGCTCGAAGGTCAGC AGGCTGATCGCATGCGCGCAGAGGCGCTTTGGCGCAACAAGGAATATGAACGCGCAAGCGAATACATGATGTCGGCGCAA GACCTGGACGGTGCCGCACGGGGGTTCTGGCTGTCCGAGGATCTGGAAGCTGTGGAGGCCATCAGTGAGGACGCAGCTCC GTTTCGGTCTGTGGCCGAGGTGACCAAGCAGATCGATTCCGCTGTGCGTGAGCCCGAAGGCTTGCCGCCTTTGGCCGAAG CGCGCGCGCTGGTAGAGAGCAGTGTCGGCGCAAGATCTTCGATTGAGGAGCTGTTGCGCAAAGTGGAGCGCACGCCAGAT GAAGTCGAGGATTGA
Upstream 100 bases:
>100_bases CGATTTGTATTGAGGTGGGGCGTCAGAACACGCCATCCCACATTCGGCCCGGGTTCTCCGAGCTGGAGGAAGCTTTGAAC GAAGTGAAACAGGGCGCAGC
Downstream 100 bases:
>100_bases CCTACAACGGACTTGGTTTCGCGACAGAATACGAATGGCCGCGCTCTCTGAGTTCGGCCATTTCGCTTTGCACTGATAAC ACTTTTTAAAGCATAGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQSVFDLIPRTRI RSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAM GLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIA VYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEE LPVNTIFSGQQTCSGGAAFWAAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARR LLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVESSVGARSSIEELLRKVERTPD EVED
Sequences:
>Translated_804_residues MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQSVFDLIPRTRI RSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAM GLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIA VYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEE LPVNTIFSGQQTCSGGAAFWAAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARR LLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVESSVGARSSIEELLRKVERTPD EVED >Mature_804_residues MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQSVFDLIPRTRI RSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAM GLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIA VYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEE LPVNTIFSGQQTCSGGAAFWAAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARR LLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVESSVGARSSIEELLRKVERTPD EVED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87578; Mature: 87578
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVG CCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECC SPTAVFNTQSVFDLIPRTRIRSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGR CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHEECCCCEEEEEECCCC SLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAMGLEDAVEQTFGSAKRQPLHT EEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC GPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHEEEHHCCCCEEEEC DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLF CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEE AVSNGRDEAASHCIPDLEIAVYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTY EECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEELPVNTIFSGQQTCSGGAAFW HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHH AAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG HHHHHHHHHCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPD CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC VPDLTASYELEYRDAALGAELRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTP CCCCCCCEEEEHHHHHHHHHHHHHEEEEEEEECCCHHHHHHCCCCHHHCCCEECCCCCCC LMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARRLLDLGFAEQAEMILRKMSLE HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC PQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ CCCHHHHHHHHHHHEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVES HCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH SVGARSSIEELLRKVERTPDEVED HCCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVG CCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECC SPTAVFNTQSVFDLIPRTRIRSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGR CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHEECCCCEEEEEECCCC SLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAMGLEDAVEQTFGSAKRQPLHT EEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC GPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHEEEHHCCCCEEEEC DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLF CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEE AVSNGRDEAASHCIPDLEIAVYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTY EECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEELPVNTIFSGQQTCSGGAAFW HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHH AAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG HHHHHHHHHCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPD CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC VPDLTASYELEYRDAALGAELRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTP CCCCCCCEEEEHHHHHHHHHHHHHEEEEEEEECCCHHHHHHCCCCHHHCCCEECCCCCCC LMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARRLLDLGFAEQAEMILRKMSLE HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC PQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ CCCHHHHHHHHHHHEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVES HCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH SVGARSSIEELLRKVERTPDEVED HCCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA