Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082751

Identifier: 99082751

GI number: 99082751

Start: 3078849

End: 3079466

Strand: Direct

Name: 99082751

Synonym: TM1040_2911

Alternate gene names: NA

Gene position: 3078849-3079466 (Clockwise)

Preceding gene: 99082750

Following gene: 99082752

Centisome position: 96.19

GC content: 59.22

Gene sequence:

>618_bases
ATGACCCGTGGTGGTGCAGAAAAATCCCGTAACGACGGGCCGGAACGTAAATGTCTCGCCACCGGCGAGACACAGCCCAA
GGCTGGGTTGGTCCGTTTCGTGCTGGGGCCTGACAATCAGGTCTACCCGGATGTGATGGGTAAACTGCCGGGACGCGGTG
TTTACATCTCAGCCACGCGTTCTGCGCTGGAACAGGCGGTAAAGAAGAAACTCTTTGCCCGCGGTTTCAAGGCGCAGGTC
GCGGTTCGGGATGATCTGGCCGACGAGGTGGAGCGCCAAGTGTTGCGCCGCACTGTCGACCTGATCAGACTGGCTCGAAA
GTCGGGCGACGCCGTGGGTGGCTATGAGAAGGTCAAGGATTGGTTGGACAAGGAAGAGGCGCGGGTTTTGATCCAAGCCT
CTGATGGGTCCGGGCGAGGAAAGTCGAAACTGAGCACGCCGCATCGCGGAAAATACATCGGATGCATGACGGCAGACGAG
CTTGGGATGGCTTTTGGGCGTGAAACTGTCATACATGCCGCGCTCGCCTCTGGTGGACTCAGCCAACGTGTTGTAGAGGA
AGCCCAGCGATTGCAGGGTTTGCGCGAAATGGGCGGCATCGGCCGCACGGAAGGATAA

Upstream 100 bases:

>100_bases
TCGACCCGGCAGAACTTGAATCCGATGCTGATGATCTCGAGGAAGAAGCCGAAGGGGAAGCGGAAGCCTGACCTGCTTCC
CAAACTCCCAGGAGATGTGA

Downstream 100 bases:

>100_bases
AGAGCTTTATGAGCGATAGTGACGGCAAAAAGACATTGGGTCTTCGTGGTAGCGGGTCTCGGCCCGGCAATGTGAAACAG
AGCTTCAGCCACGGTCGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTRGGAEKSRNDGPERKCLATGETQPKAGLVRFVLGPDNQVYPDVMGKLPGRGVYISATRSALEQAVKKKLFARGFKAQV
AVRDDLADEVERQVLRRTVDLIRLARKSGDAVGGYEKVKDWLDKEEARVLIQASDGSGRGKSKLSTPHRGKYIGCMTADE
LGMAFGRETVIHAALASGGLSQRVVEEAQRLQGLREMGGIGRTEG

Sequences:

>Translated_205_residues
MTRGGAEKSRNDGPERKCLATGETQPKAGLVRFVLGPDNQVYPDVMGKLPGRGVYISATRSALEQAVKKKLFARGFKAQV
AVRDDLADEVERQVLRRTVDLIRLARKSGDAVGGYEKVKDWLDKEEARVLIQASDGSGRGKSKLSTPHRGKYIGCMTADE
LGMAFGRETVIHAALASGGLSQRVVEEAQRLQGLREMGGIGRTEG
>Mature_204_residues
TRGGAEKSRNDGPERKCLATGETQPKAGLVRFVLGPDNQVYPDVMGKLPGRGVYISATRSALEQAVKKKLFARGFKAQVA
VRDDLADEVERQVLRRTVDLIRLARKSGDAVGGYEKVKDWLDKEEARVLIQASDGSGRGKSKLSTPHRGKYIGCMTADEL
GMAFGRETVIHAALASGGLSQRVVEEAQRLQGLREMGGIGRTEG

Specific function: Unknown

COG id: COG2740

COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22211; Mature: 22080

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRGGAEKSRNDGPERKCLATGETQPKAGLVRFVLGPDNQVYPDVMGKLPGRGVYISATR
CCCCCCCCCCCCCCCHHEEECCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEHHHH
SALEQAVKKKLFARGFKAQVAVRDDLADEVERQVLRRTVDLIRLARKSGDAVGGYEKVKD
HHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
WLDKEEARVLIQASDGSGRGKSKLSTPHRGKYIGCMTADELGMAFGRETVIHAALASGGL
HHCHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCH
SQRVVEEAQRLQGLREMGGIGRTEG
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TRGGAEKSRNDGPERKCLATGETQPKAGLVRFVLGPDNQVYPDVMGKLPGRGVYISATR
CCCCCCCCCCCCCCHHEEECCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEHHHH
SALEQAVKKKLFARGFKAQVAVRDDLADEVERQVLRRTVDLIRLARKSGDAVGGYEKVKD
HHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
WLDKEEARVLIQASDGSGRGKSKLSTPHRGKYIGCMTADELGMAFGRETVIHAALASGGL
HHCHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCH
SQRVVEEAQRLQGLREMGGIGRTEG
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA