| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082748
Identifier: 99082748
GI number: 99082748
Start: 3075504
End: 3076355
Strand: Direct
Name: 99082748
Synonym: TM1040_2908
Alternate gene names: NA
Gene position: 3075504-3076355 (Clockwise)
Preceding gene: 99082747
Following gene: 99082749
Centisome position: 96.08
GC content: 62.44
Gene sequence:
>852_bases ATGAAGCGCCTGGATCGTCGTGCTTTGTTTGCAAGCGGTGCGGCTGCGGCTTTGTTGGCAGCAACCGGCGCGGGGCTTGC GCAGACGCCGCGTCGGGGTGGGACACTGCGGATTGCGATCCCGCGTGAAGATGCGTTTCTGGCGCGGCTTGCGCGCGCGG CCGTTTACGACCAACTGACAGAGGTAGCCCCCGATGGTGTGCTGCGTGCAGAGCTTGCATCCGCATGGCGCAGTGATGAG ACGGCGCGGCATTGGAAACTCAATTTGCGTACAGATATCCCGTTTCACGACGGACGAATGATGACCGGCGCAGATGTCAT TGCCTCCCTTGAGGCGCATCTGAAGTCGGGCGCCCTCCGGCTGGAAGGGGTGAAAAATCTCGATCTCTCGTCAGACGGGG CAGTCGTCATTGATCTCGCGGAGAGCAATCCTCATCTGCCGTATCGGTTGGCGGATACTGGTTTGGTGATTGCGCCGGAT GGTGCTGTTGATGCTGTGCTGGGCGATCTGAATGGGACGGGTCTCTATCAGGTGGACCGCGCGCAGGAAGATCGTCATTT CCGAGCGCGCCGGGTGGCGCAGAACTACCGCGATGAGGTCGCGGGCTGGCTCGATGCGCTGGACCTGATCGTTATTCCCG ATGCGCAAGTGCGGGCCGAGGCACTGCGCGATGGCTTTGTGGACGTCGCAGCCTTGCCAACGGCGGAAGGGCTCCAGGGG CGGTTTCAATTCTATCCGTCCGATCAGGAGATCGCCCTGGCCGCGGCAGAGCATGTGGCCCTGCCGTCGCGCATTTCGTC GCGCGCGCCCCTTGATGACCACCGCATTGCGGAACGGTGGTGGATGGTGTGA
Upstream 100 bases:
>100_bases ATCTGATCATGGTACGAAACGCGGGACACGCGCTTTCGGAGCCGGGAATCAGCGCGGCTTTGGTCAGATGTATGGATCAG CTGGCAGAGGAAATGACCCA
Downstream 100 bases:
>100_bases TTCGACAGCATCCAGACTGATCGTCTGCGCTGCGTGACGTGACACCGGTGCTGACATACAACCCTGTGAAGCGGCGGCAA AACCTTGGCGCTTTTGCTCC
Product: peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein
Products: NA
Alternate protein names: Peptide ABC Transporter; Oligopeptide ABC Transporter; ABC Transporter; ABC Transporter Solute-Bing Protein; ABC-Type Dipeptide Transport System Periplasmic Component
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRAELASAWRSDE TARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPD GAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV
Sequences:
>Translated_283_residues MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRAELASAWRSDE TARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPD GAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV >Mature_283_residues MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRAELASAWRSDE TARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPD GAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30780; Mature: 30780
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLT CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH EVAPDGVLRAELASAWRSDETARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALR HHCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCEE LEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPDGAVDAVLGDLNGTGLYQVDR ECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHCCCCCCEEEECC AQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCC RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV EEEECCCCCCEEHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLT CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH EVAPDGVLRAELASAWRSDETARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALR HHCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCEE LEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPDGAVDAVLGDLNGTGLYQVDR ECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHCCCCCCEEEECC AQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCC RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV EEEECCCCCCEEHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA