Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082748

Identifier: 99082748

GI number: 99082748

Start: 3075504

End: 3076355

Strand: Direct

Name: 99082748

Synonym: TM1040_2908

Alternate gene names: NA

Gene position: 3075504-3076355 (Clockwise)

Preceding gene: 99082747

Following gene: 99082749

Centisome position: 96.08

GC content: 62.44

Gene sequence:

>852_bases
ATGAAGCGCCTGGATCGTCGTGCTTTGTTTGCAAGCGGTGCGGCTGCGGCTTTGTTGGCAGCAACCGGCGCGGGGCTTGC
GCAGACGCCGCGTCGGGGTGGGACACTGCGGATTGCGATCCCGCGTGAAGATGCGTTTCTGGCGCGGCTTGCGCGCGCGG
CCGTTTACGACCAACTGACAGAGGTAGCCCCCGATGGTGTGCTGCGTGCAGAGCTTGCATCCGCATGGCGCAGTGATGAG
ACGGCGCGGCATTGGAAACTCAATTTGCGTACAGATATCCCGTTTCACGACGGACGAATGATGACCGGCGCAGATGTCAT
TGCCTCCCTTGAGGCGCATCTGAAGTCGGGCGCCCTCCGGCTGGAAGGGGTGAAAAATCTCGATCTCTCGTCAGACGGGG
CAGTCGTCATTGATCTCGCGGAGAGCAATCCTCATCTGCCGTATCGGTTGGCGGATACTGGTTTGGTGATTGCGCCGGAT
GGTGCTGTTGATGCTGTGCTGGGCGATCTGAATGGGACGGGTCTCTATCAGGTGGACCGCGCGCAGGAAGATCGTCATTT
CCGAGCGCGCCGGGTGGCGCAGAACTACCGCGATGAGGTCGCGGGCTGGCTCGATGCGCTGGACCTGATCGTTATTCCCG
ATGCGCAAGTGCGGGCCGAGGCACTGCGCGATGGCTTTGTGGACGTCGCAGCCTTGCCAACGGCGGAAGGGCTCCAGGGG
CGGTTTCAATTCTATCCGTCCGATCAGGAGATCGCCCTGGCCGCGGCAGAGCATGTGGCCCTGCCGTCGCGCATTTCGTC
GCGCGCGCCCCTTGATGACCACCGCATTGCGGAACGGTGGTGGATGGTGTGA

Upstream 100 bases:

>100_bases
ATCTGATCATGGTACGAAACGCGGGACACGCGCTTTCGGAGCCGGGAATCAGCGCGGCTTTGGTCAGATGTATGGATCAG
CTGGCAGAGGAAATGACCCA

Downstream 100 bases:

>100_bases
TTCGACAGCATCCAGACTGATCGTCTGCGCTGCGTGACGTGACACCGGTGCTGACATACAACCCTGTGAAGCGGCGGCAA
AACCTTGGCGCTTTTGCTCC

Product: peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: Peptide ABC Transporter; Oligopeptide ABC Transporter; ABC Transporter; ABC Transporter Solute-Bing Protein; ABC-Type Dipeptide Transport System Periplasmic Component

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRAELASAWRSDE
TARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPD
GAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG
RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV

Sequences:

>Translated_283_residues
MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRAELASAWRSDE
TARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPD
GAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG
RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV
>Mature_283_residues
MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLTEVAPDGVLRAELASAWRSDE
TARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALRLEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPD
GAVDAVLGDLNGTGLYQVDRAQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG
RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30780; Mature: 30780

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLT
CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
EVAPDGVLRAELASAWRSDETARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALR
HHCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCEE
LEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPDGAVDAVLGDLNGTGLYQVDR
ECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHCCCCCCEEEECC
AQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG
CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCC
RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV
EEEECCCCCCEEHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKRLDRRALFASGAAAALLAATGAGLAQTPRRGGTLRIAIPREDAFLARLARAAVYDQLT
CCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
EVAPDGVLRAELASAWRSDETARHWKLNLRTDIPFHDGRMMTGADVIASLEAHLKSGALR
HHCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHCCCEE
LEGVKNLDLSSDGAVVIDLAESNPHLPYRLADTGLVIAPDGAVDAVLGDLNGTGLYQVDR
ECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEECCCCCHHHHHHCCCCCCEEEECC
AQEDRHFRARRVAQNYRDEVAGWLDALDLIVIPDAQVRAEALRDGFVDVAALPTAEGLQG
CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCC
RFQFYPSDQEIALAAAEHVALPSRISSRAPLDDHRIAERWWMV
EEEECCCCCCEEHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA