BacMap

Definition	Ruegeria sp. TM1040, complete genome.
Accession	NC_008044
Length	3,200,938

Click here to switch to the map view.

The map label for this gene is 99082735

Identifier: 99082735

GI number: 99082735

Start: 3065895

End: 3066680

Strand: Direct

Name: 99082735

Synonym: TM1040_2895

Alternate gene names: NA

Gene position: 3065895-3066680 (Clockwise)

Preceding gene: 99082734

Following gene: 99082736

Centisome position: 95.78

GC content: 56.36

Gene sequence:

>786_bases
ATGATTGATCGATTGAAATCCGTATTGGACAGCGATGGATTCAGCCGCTTCATCACCGCGGTCATCCTTGTCAACGCGGT
GACATTGGGGATGGAGACCTCCGATACGATCATGCAGCGCATGGGACAGCTGGTTTTGTTGATCGACAAGGTCTGCCTGA
TCATCTTTGTGACAGAGATCGCTGCCAAGCTTTTGGTGCGCCGACACAGGTTCTTTTTGAGCGGCTGGAACATCTTTGAT
TTCCTGATTGTCGGCGTTGCGCTTGTGCCGGGCGCGCAAGGGTTCTCTGTGCTTCGGGCGCTGCGTATCCTGCGCGTGCT
GCGCGTGATTTCGGTCGCGCCCCGTTTGCGCCGCGTGGTGGAGGGGTTCATCACTGCCTTGCCGGGTATGGGATCGGTGT
TCCTGCTGATGGCGATCATCTTCTACATTGGTGCCGTCATGGCGACGAAGCTCTTTGGAGACAGCTTTCCAGACTGGTTC
GGCAGTCTTGCGCTTTCGGCTTATTCGCTGTTCCAGATCATGACGCTTGAGAGCTGGTCGATGGGAATCGTGCGCCCGGT
GATGGACATCTACCCCTATGCCTGGGCGTTCTTTGTGCCCTTCATTATGGTCACGACCTTTGCGGTGGTGAACTTGCTTG
TGGGTTTGATCGTGAACTCGATGCAGGATGCCCATTCCGAAGAAGAGGGCGAGCGCACCGATGCCTATCGCGATCAGGTC
CTGTCGCGGCTCGAGGCCATCGAGGCGAGTCTTGCTCGGTTGCAGGACGACAAGACGCAAAAGTGA

Upstream 100 bases:

>100_bases
TTGGGTGCAGGTTGTTGACCAGTTTCGTTGGTCATCGCATACGGAGCTGGCAGCCTCATTCAGCCTGACCTGACCGCAAA
CCAAAAGGAGCGCAGTTTAC

Downstream 100 bases:

>100_bases
TTATCATTTGTTAACCAAGTTTGCTCTAACATTAAGGCAAGAGCTCAAAACTAAACGAGTGGACAGATTAGACGATGCAC
AGGCGCACATTCGGGGCAGG

Product: Ion transport protein

Products: NA

Alternate protein names: Cation Channel Family Protein; Voltage-Gated Sodium Channel Subunit; Cation Transporter Component; Transporter Cation Channel Family; Cation Transporter; K+ Transporter Kef-Type; Voltage-Gated Sodium Channel Protein; Ion Channel Selectivity Component; Sodium Channel Na(V)BP; Ion Transporter; Cold Shock Protein

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MIDRLKSVLDSDGFSRFITAVILVNAVTLGMETSDTIMQRMGQLVLLIDKVCLIIFVTEIAAKLLVRRHRFFLSGWNIFD
FLIVGVALVPGAQGFSVLRALRILRVLRVISVAPRLRRVVEGFITALPGMGSVFLLMAIIFYIGAVMATKLFGDSFPDWF
GSLALSAYSLFQIMTLESWSMGIVRPVMDIYPYAWAFFVPFIMVTTFAVVNLLVGLIVNSMQDAHSEEEGERTDAYRDQV
LSRLEAIEASLARLQDDKTQK

Sequences:

>Translated_261_residues
MIDRLKSVLDSDGFSRFITAVILVNAVTLGMETSDTIMQRMGQLVLLIDKVCLIIFVTEIAAKLLVRRHRFFLSGWNIFD
FLIVGVALVPGAQGFSVLRALRILRVLRVISVAPRLRRVVEGFITALPGMGSVFLLMAIIFYIGAVMATKLFGDSFPDWF
GSLALSAYSLFQIMTLESWSMGIVRPVMDIYPYAWAFFVPFIMVTTFAVVNLLVGLIVNSMQDAHSEEEGERTDAYRDQV
LSRLEAIEASLARLQDDKTQK
>Mature_261_residues
MIDRLKSVLDSDGFSRFITAVILVNAVTLGMETSDTIMQRMGQLVLLIDKVCLIIFVTEIAAKLLVRRHRFFLSGWNIFD
FLIVGVALVPGAQGFSVLRALRILRVLRVISVAPRLRRVVEGFITALPGMGSVFLLMAIIFYIGAVMATKLFGDSFPDWF
GSLALSAYSLFQIMTLESWSMGIVRPVMDIYPYAWAFFVPFIMVTTFAVVNLLVGLIVNSMQDAHSEEEGERTDAYRDQV
LSRLEAIEASLARLQDDKTQK

Specific function: Unknown

COG id: COG1226

COG function: function code P; Kef-type K+ transport systems, predicted NAD-binding component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53832011, Length=273, Percent_Identity=27.1062271062271, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI53832009, Length=273, Percent_Identity=27.1062271062271, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI51093859, Length=271, Percent_Identity=24.7232472324723, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI21361077, Length=271, Percent_Identity=24.7232472324723, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI38505282, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38505294, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38505286, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38505276, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI20070163, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38505284, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38505272, Length=251, Percent_Identity=27.4900398406374, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI38505268, Length=254, Percent_Identity=25.9842519685039, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI38505280, Length=254, Percent_Identity=25.9842519685039, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI38505278, Length=254, Percent_Identity=25.9842519685039, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI38505288, Length=254, Percent_Identity=25.9842519685039, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI38505292, Length=254, Percent_Identity=25.9842519685039, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI38505290, Length=254, Percent_Identity=25.9842519685039, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI38505270, Length=254, Percent_Identity=25.9842519685039, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI38505274, Length=254, Percent_Identity=25.9842519685039, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI4506813, Length=262, Percent_Identity=26.3358778625954, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI93141212, Length=257, Percent_Identity=27.2373540856031, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI93141210, Length=257, Percent_Identity=27.2373540856031, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI93141214, Length=257, Percent_Identity=27.2373540856031, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7657544, Length=257, Percent_Identity=26.8482490272374, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI295789135, Length=257, Percent_Identity=26.8482490272374, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI260166635, Length=257, Percent_Identity=26.8482490272374, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126362947, Length=257, Percent_Identity=27.6264591439689, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126362955, Length=257, Percent_Identity=27.6264591439689, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI115583677, Length=257, Percent_Identity=26.8482490272374, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI115583667, Length=213, Percent_Identity=24.8826291079812, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI260166633, Length=257, Percent_Identity=26.8482490272374, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126362949, Length=257, Percent_Identity=27.6264591439689, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI93587342, Length=169, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI237512982, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI37622907, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI150417967, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI30089970, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI150417969, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI310127608, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI310127606, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI62988334, Length=251, Percent_Identity=24.3027888446215, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI110835710, Length=201, Percent_Identity=27.8606965174129, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI29789451, Length=241, Percent_Identity=24.896265560166, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71986069, Length=266, Percent_Identity=24.0601503759398, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25146601, Length=266, Percent_Identity=24.0601503759398, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71986085, Length=265, Percent_Identity=24.1509433962264, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71986080, Length=273, Percent_Identity=23.4432234432234, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161077483, Length=260, Percent_Identity=26.5384615384615, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24642537, Length=282, Percent_Identity=24.468085106383, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007172, Length=282, Percent_Identity=24.468085106383, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007170, Length=147, Percent_Identity=31.9727891156463, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221329977, Length=147, Percent_Identity=31.9727891156463, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI161077583, Length=241, Percent_Identity=23.6514522821577, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29228; Mature: 29228

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA