| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yibF [C]
Identifier: 99082665
GI number: 99082665
Start: 2994033
End: 2994698
Strand: Direct
Name: yibF [C]
Synonym: TM1040_2825
Alternate gene names: 99082665
Gene position: 2994033-2994698 (Clockwise)
Preceding gene: 99082664
Following gene: 99082669
Centisome position: 93.54
GC content: 56.61
Gene sequence:
>666_bases ATGGCTCGTCTCTATCATGTCCCCCTGTCGCCCTTCTGTCGCAAAGTGCGTCTGTCTCTGGCGGAGAAGAAGATTGAGGT GGAGCTTGTCGAGGAGCGCTACTGGGAGCAGGATGCGGACTTTTTGCGCCGCAACCCAGCCGCAAAGGTCCCTGTCTTGC GCCTCGATGGGATTCTCATGGCAGAAAGCGCGGCGATCTGTGAATATATCGAAGAAACTCGCCCAGACCCATCCCTGATG CCGAAGAAGCCAGCCGAACGGCTGGAAGTGCGCCGTCTGGTGAGCTGGTTTGACGACAAGTTTCACCATGAAGTCACCTC AAAGCTGCTCTACGAGCGCGTCAACAAAAAGATGACTGGCGAGGGATATCCTGACAGCGGCAACGTGAAATCAGGGGCGA AGGCGATCAAATACCACATCGATTACCTGTCCTGGCTGCTGGACCACCGCCGCTGGCTTGCAGGGGATTCGATGACGCTT GCAGATTTTGCCGCCGCAGCACATCTGTCTTCTCTGGACTATATCTCAGATGTGGATTGGAACCGCTCTGCAGTGGTGAA GGATTGGTACGCGAAAATCAAATCGAGGCCCGCGTTCCGCTCCATTCTGGCCGATCAGGTTCCGGGGTTCCGCCCCCCTT CGCACTACGCCGATCTGGACTTCTGA
Upstream 100 bases:
>100_bases CGACGGACGCTCTGCCTGTTTCGAGCATTGAAGTTTCTGCTCCGGCAAGGCATTGCTGGTGCACCACGATATCACAACAC CCGGAGAACCGAGGACGCCC
Downstream 100 bases:
>100_bases AACCACGCCGCGCGCGCAATTCATCCTTGATTGATCCACGGGATGAGGGTATCCCCGGCAGCGCTTCGCCTCAATAGCTC AGCTGGTAGAGCAGGTCCTT
Product: glutathione S-transferase-like
Products: HX; R-S-glutathione
Alternate protein names: Glutathione S-Transferase Domain-Containing Protein; Glutathione S-Transferase Domain Protein; Glutathione S-Transferase Family Protein; Glutathione S-Transferase-Like Protein; Glutathione S-Transferase-Like; Glutathione S-Transferase Protein; Stringent Starvation Protein A; Glutathione Transferase; Glutathione S-Transferase Domain; Glutathione S-Transferase N-Terminal Domain Protein; Glutathione S-Transferase III; Gst-Related Protein; Protein LigF; Transferase; Glutathione S-Transferase With Thioredoxin-Like Domain; Transcription Modulator Protein; Unkown Function; Glutathione S-Transferase Ta Family; Glutathione S-Transferase C-Terminal Domain Protein; Glutathione S- Transferase N-Terminal
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MARLYHVPLSPFCRKVRLSLAEKKIEVELVEERYWEQDADFLRRNPAAKVPVLRLDGILMAESAAICEYIEETRPDPSLM PKKPAERLEVRRLVSWFDDKFHHEVTSKLLYERVNKKMTGEGYPDSGNVKSGAKAIKYHIDYLSWLLDHRRWLAGDSMTL ADFAAAAHLSSLDYISDVDWNRSAVVKDWYAKIKSRPAFRSILADQVPGFRPPSHYADLDF
Sequences:
>Translated_221_residues MARLYHVPLSPFCRKVRLSLAEKKIEVELVEERYWEQDADFLRRNPAAKVPVLRLDGILMAESAAICEYIEETRPDPSLM PKKPAERLEVRRLVSWFDDKFHHEVTSKLLYERVNKKMTGEGYPDSGNVKSGAKAIKYHIDYLSWLLDHRRWLAGDSMTL ADFAAAAHLSSLDYISDVDWNRSAVVKDWYAKIKSRPAFRSILADQVPGFRPPSHYADLDF >Mature_220_residues ARLYHVPLSPFCRKVRLSLAEKKIEVELVEERYWEQDADFLRRNPAAKVPVLRLDGILMAESAAICEYIEETRPDPSLMP KKPAERLEVRRLVSWFDDKFHHEVTSKLLYERVNKKMTGEGYPDSGNVKSGAKAIKYHIDYLSWLLDHRRWLAGDSMTLA DFAAAAHLSSLDYISDVDWNRSAVVKDWYAKIKSRPAFRSILADQVPGFRPPSHYADLDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22202624, Length=164, Percent_Identity=27.4390243902439, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17556142, Length=189, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17551302, Length=204, Percent_Identity=30.3921568627451, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17510461, Length=156, Percent_Identity=31.4102564102564, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322968, Length=222, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI20130123, Length=204, Percent_Identity=28.921568627451, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.5.1.18
Molecular weight: Translated: 25568; Mature: 25437
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLYHVPLSPFCRKVRLSLAEKKIEVELVEERYWEQDADFLRRNPAAKVPVLRLDGILM CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHH AESAAICEYIEETRPDPSLMPKKPAERLEVRRLVSWFDDKFHHEVTSKLLYERVNKKMTG HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EGYPDSGNVKSGAKAIKYHIDYLSWLLDHRRWLAGDSMTLADFAAAAHLSSLDYISDVDW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC NRSAVVKDWYAKIKSRPAFRSILADQVPGFRPPSHYADLDF CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure ARLYHVPLSPFCRKVRLSLAEKKIEVELVEERYWEQDADFLRRNPAAKVPVLRLDGILM CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHH AESAAICEYIEETRPDPSLMPKKPAERLEVRRLVSWFDDKFHHEVTSKLLYERVNKKMTG HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EGYPDSGNVKSGAKAIKYHIDYLSWLLDHRRWLAGDSMTLADFAAAAHLSSLDYISDVDW CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC NRSAVVKDWYAKIKSRPAFRSILADQVPGFRPPSHYADLDF CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: RX; glutathione
Specific reaction: RX + glutathione = HX + R-S-glutathione
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA