| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082651
Identifier: 99082651
GI number: 99082651
Start: 2975043
End: 2975564
Strand: Direct
Name: 99082651
Synonym: TM1040_2811
Alternate gene names: NA
Gene position: 2975043-2975564 (Clockwise)
Preceding gene: 99082650
Following gene: 99082659
Centisome position: 92.94
GC content: 62.84
Gene sequence:
>522_bases ATGGCGCTGATACTGTTTCTGCATGGCCCCTCCAGCAGCGGCAAATCCACACTCGCCAAAGCGATCAGAGAGGCTTCCTC CCGACCGCTCCTGCATCTCTCCATCGATCATCTGCGCGACAGCGGAGCCTGGGAGCCGCAGGCCTACCCGGATTGGGCAG GAGCGCGCGCTGGATTCTTCTCCGGCTTTCACAGGGCGGTCAAAGCCTTTGCGGATGCCGGGAACGACCTGATCCTTGAG CATATCCTCGACACGCCGGGCTGGCATGCTGATCTCCAGCAGCTCTTTTGCGGCCACAAGGTCATTTTCATCGGCCTCAC GCCCTCGCTATCCACGCTCGAGACCCGCGAGGCCGCGCGCGGCGACCGCCCGGCGGGCAGCGCAGCGCGGGATTTTGAAC ATGTTCACCGCGACCTCAGCTATGATCTGACGCTGGATGGCTCCGCCCCCCTCCAGGAGAGTGTCAGATCCATCCTGTCG ATGACCTCTGCACCACTAGCCCGCTCCCGGTTCTTCAACTGA
Upstream 100 bases:
>100_bases TGCGCTTTGCCACACCACAGACCGAAGGCGCCCTCGTTCAGGCGCAGATCACCGGGAGCGATGGGCTGCAGCTCACCGCC TGACGCCGGGAGGTCGTCCA
Downstream 100 bases:
>100_bases TCCCCTCCCCCTTCTTCTAACGGCAAATATCCCGGGGTGAATGCGCCGTCAGGCGCAGAGGGGCTGGCCCCATTTCTAGA ATCAAAAAAAACCCCCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MALILFLHGPSSSGKSTLAKAIREASSRPLLHLSIDHLRDSGAWEPQAYPDWAGARAGFFSGFHRAVKAFADAGNDLILE HILDTPGWHADLQQLFCGHKVIFIGLTPSLSTLETREAARGDRPAGSAARDFEHVHRDLSYDLTLDGSAPLQESVRSILS MTSAPLARSRFFN
Sequences:
>Translated_173_residues MALILFLHGPSSSGKSTLAKAIREASSRPLLHLSIDHLRDSGAWEPQAYPDWAGARAGFFSGFHRAVKAFADAGNDLILE HILDTPGWHADLQQLFCGHKVIFIGLTPSLSTLETREAARGDRPAGSAARDFEHVHRDLSYDLTLDGSAPLQESVRSILS MTSAPLARSRFFN >Mature_172_residues ALILFLHGPSSSGKSTLAKAIREASSRPLLHLSIDHLRDSGAWEPQAYPDWAGARAGFFSGFHRAVKAFADAGNDLILEH ILDTPGWHADLQQLFCGHKVIFIGLTPSLSTLETREAARGDRPAGSAARDFEHVHRDLSYDLTLDGSAPLQESVRSILSM TSAPLARSRFFN
Specific function: Unknown
COG id: COG3896
COG function: function code V; Chloramphenicol 3-O-phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18876; Mature: 18745
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALILFLHGPSSSGKSTLAKAIREASSRPLLHLSIDHLRDSGAWEPQAYPDWAGARAGFF CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHH SGFHRAVKAFADAGNDLILEHILDTPGWHADLQQLFCGHKVIFIGLTPSLSTLETREAAR HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHC GDRPAGSAARDFEHVHRDLSYDLTLDGSAPLQESVRSILSMTSAPLARSRFFN CCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHCCC >Mature Secondary Structure ALILFLHGPSSSGKSTLAKAIREASSRPLLHLSIDHLRDSGAWEPQAYPDWAGARAGFF EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHH SGFHRAVKAFADAGNDLILEHILDTPGWHADLQQLFCGHKVIFIGLTPSLSTLETREAAR HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHC GDRPAGSAARDFEHVHRDLSYDLTLDGSAPLQESVRSILSMTSAPLARSRFFN CCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA