| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082624
Identifier: 99082624
GI number: 99082624
Start: 2944029
End: 2945063
Strand: Reverse
Name: 99082624
Synonym: TM1040_2784
Alternate gene names: NA
Gene position: 2945063-2944029 (Counterclockwise)
Preceding gene: 99082625
Following gene: 99082623
Centisome position: 92.01
GC content: 58.26
Gene sequence:
>1035_bases ATGACAACACGTCGTAATTTTCTAAAGACCACCGCCTTGGGCGCTGCCGCTGCACCGCTTGCAGCGCCTGCGCTGGCGTC TGGTAAGATCACATGGCGGATGCAGACCTACGCCGGTCCCGCGCTTGCAGCGCATGTGATCGACCCGGCGATTGAAATGT TCAACAAGATCGCAGGCGACCGCATGCAGATCGAGCTTTTCTACGCCGACCAGCTGGTCCCCACGGGTGAGCTGTTCCGT GCCATGCAGAAAGGCACCATCGACGCGGTACAGTCTGATGACGATTCCATGGCGTCTCCGACAGAAGTGACCGTTTTTGG CGGCTATTTCCCCTTTGCGTCGCGCTACTCGCTCGACGTGCCGGTGCTGTTCAACCAGTACGGCCTCAACGAGATCTGGG ATGCGGAATACTCCAAGGTGGGCGTCAAGCACATCTCCGCAGGCGCTTGGGATCCTTGCCACTTTGCCACCAAAGATCCG ATCAACTCGCTTGAGGATCTCAAGGGCAAGCGCGTCTTCACCTTCCCGACTGCGGGCCGCTTCCTGAGCCAGTTCGGCGT CGTGCCTGTCACCCTGCCGTGGGAAGACATCGAAGTTGCAATGCAGACCGGCGAGTTGGATGGCGTTGCTTGGTCGGGCA TTACCGAAGATTACACCGTGGGTTGGGCCGATGTGACCAACTACTTCCTGACCAACAACATTTCCGGTGCATGGGCAGGC AGCTTCTTTGCCAACATGGACCGTTGGAACGAGCTGCCCGAAGATCTGCAGGCGCTGTTCCGTGTCTGCACCGACCAGTC GCATTACTATCGCCAGTGGTGGTACTGGGGTGGCGAAGCCTCCTTGCGCGTCAATGGCGACAAGATGAAGCTGACCTCGA TCCCCGATGCAGAATGGCAGCAGGTCGAAGATGCCGCGGTAAAGTTCTGGGACGAGATCGCAGCCGAATCCGAAACCAAG GCGAAGGTTGTCGAGATCTTCAAGAAGTACAACGCCGATATGGCGAAAGCCGGTCGTCCGTATCGTTACGGCTGA
Upstream 100 bases:
>100_bases CCCGCAGATCGCACTTTGGCTGCCGGAGACCATTTACGGACAATAAGCAGAAGGCCCTGTTCAAACGGCCCCAGACGATA ACCACAGAGAGGTACTACTG
Downstream 100 bases:
>100_bases TCACACGTGCAATAGCAATCAATGTCGGGGGCGGGGTTTCACTCTGCCCCCTGTCAAAACAACAGGGAACGCCAGATGAC TTTCGAGGATCTCAAGGAAC
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter Subunit DctP; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; TRAP Dicarboxylate Transporter; TRAP-Type Transporter Periplasmic Component; TRAP-Type Mannitol/Chloroaromatic Compound Transport System
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFR AMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDP INSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETK AKVVEIFKKYNADMAKAGRPYRYG
Sequences:
>Translated_344_residues MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFR AMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDP INSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETK AKVVEIFKKYNADMAKAGRPYRYG >Mature_343_residues TTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFRA MQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDPI NSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAGS FFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETKA KVVEIFKKYNADMAKAGRPYRYG
Specific function: Unknown
COG id: COG4663
COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38469; Mature: 38337
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGD CCCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC RMQIELFYADQLVPTGELFRAMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDV EEEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC PVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDPINSLEDLKGKRVFTFPTAGR CEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHH FLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG HHHHCCCEEEEECHHHHHHHHCCCCCCCEEECCCCCCCEECHHHHHHHHHHCCCCCCCHH SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQ HHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCHHHH QVEDAAVKFWDEIAAESETKAKVVEIFKKYNADMAKAGRPYRYG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCC >Mature Secondary Structure TTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGD CCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC RMQIELFYADQLVPTGELFRAMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDV EEEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC PVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDPINSLEDLKGKRVFTFPTAGR CEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHH FLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG HHHHCCCEEEEECHHHHHHHHCCCCCCCEEECCCCCCCEECHHHHHHHHHHCCCCCCCHH SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQ HHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCHHHH QVEDAAVKFWDEIAAESETKAKVVEIFKKYNADMAKAGRPYRYG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA