Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082624

Identifier: 99082624

GI number: 99082624

Start: 2944029

End: 2945063

Strand: Reverse

Name: 99082624

Synonym: TM1040_2784

Alternate gene names: NA

Gene position: 2945063-2944029 (Counterclockwise)

Preceding gene: 99082625

Following gene: 99082623

Centisome position: 92.01

GC content: 58.26

Gene sequence:

>1035_bases
ATGACAACACGTCGTAATTTTCTAAAGACCACCGCCTTGGGCGCTGCCGCTGCACCGCTTGCAGCGCCTGCGCTGGCGTC
TGGTAAGATCACATGGCGGATGCAGACCTACGCCGGTCCCGCGCTTGCAGCGCATGTGATCGACCCGGCGATTGAAATGT
TCAACAAGATCGCAGGCGACCGCATGCAGATCGAGCTTTTCTACGCCGACCAGCTGGTCCCCACGGGTGAGCTGTTCCGT
GCCATGCAGAAAGGCACCATCGACGCGGTACAGTCTGATGACGATTCCATGGCGTCTCCGACAGAAGTGACCGTTTTTGG
CGGCTATTTCCCCTTTGCGTCGCGCTACTCGCTCGACGTGCCGGTGCTGTTCAACCAGTACGGCCTCAACGAGATCTGGG
ATGCGGAATACTCCAAGGTGGGCGTCAAGCACATCTCCGCAGGCGCTTGGGATCCTTGCCACTTTGCCACCAAAGATCCG
ATCAACTCGCTTGAGGATCTCAAGGGCAAGCGCGTCTTCACCTTCCCGACTGCGGGCCGCTTCCTGAGCCAGTTCGGCGT
CGTGCCTGTCACCCTGCCGTGGGAAGACATCGAAGTTGCAATGCAGACCGGCGAGTTGGATGGCGTTGCTTGGTCGGGCA
TTACCGAAGATTACACCGTGGGTTGGGCCGATGTGACCAACTACTTCCTGACCAACAACATTTCCGGTGCATGGGCAGGC
AGCTTCTTTGCCAACATGGACCGTTGGAACGAGCTGCCCGAAGATCTGCAGGCGCTGTTCCGTGTCTGCACCGACCAGTC
GCATTACTATCGCCAGTGGTGGTACTGGGGTGGCGAAGCCTCCTTGCGCGTCAATGGCGACAAGATGAAGCTGACCTCGA
TCCCCGATGCAGAATGGCAGCAGGTCGAAGATGCCGCGGTAAAGTTCTGGGACGAGATCGCAGCCGAATCCGAAACCAAG
GCGAAGGTTGTCGAGATCTTCAAGAAGTACAACGCCGATATGGCGAAAGCCGGTCGTCCGTATCGTTACGGCTGA

Upstream 100 bases:

>100_bases
CCCGCAGATCGCACTTTGGCTGCCGGAGACCATTTACGGACAATAAGCAGAAGGCCCTGTTCAAACGGCCCCAGACGATA
ACCACAGAGAGGTACTACTG

Downstream 100 bases:

>100_bases
TCACACGTGCAATAGCAATCAATGTCGGGGGCGGGGTTTCACTCTGCCCCCTGTCAAAACAACAGGGAACGCCAGATGAC
TTTCGAGGATCTCAAGGAAC

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: Twin-Arginine Translocation Pathway Signal; Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter Subunit DctP; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; TRAP Dicarboxylate Transporter; TRAP-Type Transporter Periplasmic Component; TRAP-Type Mannitol/Chloroaromatic Compound Transport System

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFR
AMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDP
INSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG
SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETK
AKVVEIFKKYNADMAKAGRPYRYG

Sequences:

>Translated_344_residues
MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFR
AMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDP
INSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG
SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETK
AKVVEIFKKYNADMAKAGRPYRYG
>Mature_343_residues
TTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGDRMQIELFYADQLVPTGELFRA
MQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDVPVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDPI
NSLEDLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAGS
FFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQQVEDAAVKFWDEIAAESETKA
KVVEIFKKYNADMAKAGRPYRYG

Specific function: Unknown

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38469; Mature: 38337

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGD
CCCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
RMQIELFYADQLVPTGELFRAMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDV
EEEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC
PVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDPINSLEDLKGKRVFTFPTAGR
CEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHH
FLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG
HHHHCCCEEEEECHHHHHHHHCCCCCCCEEECCCCCCCEECHHHHHHHHHHCCCCCCCHH
SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQ
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCHHHH
QVEDAAVKFWDEIAAESETKAKVVEIFKKYNADMAKAGRPYRYG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCC
>Mature Secondary Structure 
TTRRNFLKTTALGAAAAPLAAPALASGKITWRMQTYAGPALAAHVIDPAIEMFNKIAGD
CCCHHHHHHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
RMQIELFYADQLVPTGELFRAMQKGTIDAVQSDDDSMASPTEVTVFGGYFPFASRYSLDV
EEEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC
PVLFNQYGLNEIWDAEYSKVGVKHISAGAWDPCHFATKDPINSLEDLKGKRVFTFPTAGR
CEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCHHH
FLSQFGVVPVTLPWEDIEVAMQTGELDGVAWSGITEDYTVGWADVTNYFLTNNISGAWAG
HHHHCCCEEEEECHHHHHHHHCCCCCCCEEECCCCCCCEECHHHHHHHHHHCCCCCCCHH
SFFANMDRWNELPEDLQALFRVCTDQSHYYRQWWYWGGEASLRVNGDKMKLTSIPDAEWQ
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCHHHH
QVEDAAVKFWDEIAAESETKAKVVEIFKKYNADMAKAGRPYRYG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA