Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082496

Identifier: 99082496

GI number: 99082496

Start: 2791376

End: 2792497

Strand: Reverse

Name: 99082496

Synonym: TM1040_2656

Alternate gene names: NA

Gene position: 2792497-2791376 (Counterclockwise)

Preceding gene: 99082497

Following gene: 99082495

Centisome position: 87.24

GC content: 61.23

Gene sequence:

>1122_bases
ATGCAATGGAACATCTGTGTTGTGGGCGCGGGCAAGATCGGCCAGGCGATTGCCACGTTTTTAAAGACATCTGCCAACTA
TCAGGTGACCCTCGCGGATCATGACCTGAATGCGCTGGGCGCGGTGGCGGAGCTGGGGGTGCCGACCCGGCAGATCGACG
CCAAGGATCCGGTGTCGCTGGCAAAGGGGCTTCAGGGGTTTGACGCGGTGATTTCTGCCGCGCCGTTCTTTTTGACGCCA
ATGATAGCGGAGGCCGCAAAAACCGCCGGCGCGCATTATTTCGACCTCACCGAGGATGTGGCCGCCACCGAAGCGGTGCG
CAAACTGGCCGAAGGCAGCGAGACGGTGTTCATGCCCCAGAGCGGCCTTGCGCCCGGTTTCGTGGGCATCGCGGGCGCGT
CACTGGCGGCAGAATTCGATGAGCTGGACAGCCTGCACATGCGGGTCGGCGCGCTGCCGAAGTTTCCGACCAACGCGTTG
AAATATAATCTCACCTGGTCCACCGACGGGCTGATCAACGAGTATTGCAACCCCTGCGATGCCATCGTGAATGGCGCGCG
CACCAAGACAGCGCCGCTCGAAGATTACGAGCGTCTGAGCCTTGATGGGGTTGAGTATGAATGCTTCAACACCTCGGGTG
GGCTTGGCACCTTGCCAGAGACGCTGGACGGGAAGGCGCGGGCGGTCTCGTATCGGTCGATCCGCTATCCCGGTCACTGC
GACATCCTGAAAATGCTGCTGCATGATCTGGGGCTGGAACGCCGCCGCGACCTGATGAAAGAGATTTTCGAGAGCGCATT
GCCGCGCACCGATCAGGACGTGGTGCTGGTCTATTGCACCGCGCGGGGCCGCATCAATGGCGAGCTGCGTGAAAAGAGCC
TCATCAACAAGAGCTATGCCCGCCAGATCGGCGGCAAGACCTGGAGCGCGATCCAAGTCACCACCACCGCCGGGGTGCTG
GGGGTTGTGGATCTGGTGCGGCAAGGCGTCCTGCCCGCGCGCGGCTTTGTAAGCCAGGAACAGGTGAAGCTGCAGGACTT
CCTCGAGACAGAATTTGGCCAGCTCTACCGGGCGGGCGACATCGACCACATGACAGACACAACAAAATTGGCAGCTGAGT
GA

Upstream 100 bases:

>100_bases
CCGTCATAGTGGCGTGATTTTACGTCACTCCGACAATTCCGGCCCTACAAATCGAACAATTGAACCTGCACGCTGCTCTC
AAACAGGAGGTGCAGGTCAC

Downstream 100 bases:

>100_bases
TGAAAGACATGGCACGAACAGCAGACGATATCCTGAAGAACCTGGGCCTGACGGCGGCAGAGCTGAGCGGTGGCAGCCGC
GCGGTGCGCTCGCCCATTGA

Product: saccharopine dehydrogenase

Products: NA

Alternate protein names: Dehydrogenase; L-Lysine Dehydrogenase; Saccharopine Reductase; Saccharopine Dehydrogenase Family Protein; Dehydrogenase Protein; Saccharopine Dehydrogenase Protein; Saccharopine Dehydrogenase And Related Protein; TrkA-NSaccharopine Dehydrogenase; Oxidoreductase; Saccharopine Dehydrogenase Conjectural; Saccharopine Dehydrogenase-Like Protein; Saccharopine Dehydrogenase/Saccharopine Reductase

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAVISAAPFFLTP
MIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNAL
KYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC
DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVL
GVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGDIDHMTDTTKLAAE

Sequences:

>Translated_373_residues
MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAVISAAPFFLTP
MIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNAL
KYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC
DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVL
GVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGDIDHMTDTTKLAAE
>Mature_373_residues
MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSLAKGLQGFDAVISAAPFFLTP
MIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQSGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNAL
KYNLTWSTDGLINEYCNPCDAIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC
DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYARQIGGKTWSAIQVTTTAGVL
GVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGDIDHMTDTTKLAAE

Specific function: Unknown

COG id: COG1748

COG function: function code E; Saccharopine dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40369; Mature: 40369

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSL
CCEEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHH
AKGLQGFDAVISAAPFFLTPMIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQ
HHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCEEEECC
SGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNALKYNLTWSTDGLINEYCNPCD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHCCHHH
AIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC
HHHCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCHHEEEEEEECCCCCH
DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYA
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
RQIGGKTWSAIQVTTTAGVLGVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGD
HHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
IDHMTDTTKLAAE
CCHHCCCHHHCCC
>Mature Secondary Structure
MQWNICVVGAGKIGQAIATFLKTSANYQVTLADHDLNALGAVAELGVPTRQIDAKDPVSL
CCEEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHH
AKGLQGFDAVISAAPFFLTPMIAEAAKTAGAHYFDLTEDVAATEAVRKLAEGSETVFMPQ
HHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCEEEECC
SGLAPGFVGIAGASLAAEFDELDSLHMRVGALPKFPTNALKYNLTWSTDGLINEYCNPCD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHCCHHH
AIVNGARTKTAPLEDYERLSLDGVEYECFNTSGGLGTLPETLDGKARAVSYRSIRYPGHC
HHHCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCHHEEEEEEECCCCCH
DILKMLLHDLGLERRRDLMKEIFESALPRTDQDVVLVYCTARGRINGELREKSLINKSYA
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
RQIGGKTWSAIQVTTTAGVLGVVDLVRQGVLPARGFVSQEQVKLQDFLETEFGQLYRAGD
HHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
IDHMTDTTKLAAE
CCHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA