Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082493

Identifier: 99082493

GI number: 99082493

Start: 2787233

End: 2787934

Strand: Direct

Name: 99082493

Synonym: TM1040_2653

Alternate gene names: NA

Gene position: 2787233-2787934 (Clockwise)

Preceding gene: 99082492

Following gene: 99082494

Centisome position: 87.08

GC content: 60.4

Gene sequence:

>702_bases
ATGCCGGACGCAACTTTCTCCGTTTCTGAGGTCCGCCACGCCGGGTCCCGGGTGATCGCGCTTGGGATTGGCGCCATTGT
GGCCCTTCTGGTCGTCGCGGGCACGGTGCTGCTTCTGACCCTGCCGGACGGCAATGCGTTCAATGCCCGCATTGAACGGC
TCTTTGTGGAAAACGACCTCACCACCCAGGCCGAGATCAAGCTGCTGGAGATCCTCGCCCAGAGCGGCACCGCCTTTGCC
GACACGCTGGCAAGCTACCGTATGGTGATCTTTGTGCTTTTGGTCTTTGCCACCGCGATGATGATTGCCGCCCTCGTGGT
GCTGGCAATGCTGGTGATGCTGAACCGGCGCATGGCGCAGATCGAACGTGCCGGGATTCAGGTGACGGAACTGCTGATCA
GCCGCGAGGAAAACACCGTTTACCTCAACAATATGGGCTTCAAGCTCACCCAGGCCGCGATGGAGACGCTCTCCGTCCTC
GCCGAGGCGCGGCTTGATGATGATGTGCTCTCGGGTGCCGAGATCGAGGCGGTGATTTCCGGCAAATCCAGCCATGATTG
CGAGGAAGCCGCCGGGGCGACCCGCATCAAACGGCTGCGCGACACCCTTGGCAATCAGATGATCAGCGAGCTGTTGGTGA
AGAACATCGCCAAACGCGGCTATGTGCTGGCGATCAACAAGGATGTGATCCGCATGGTGTGA

Upstream 100 bases:

>100_bases
GCCAAAGGCGAGGTGGCCGAACGCCTCTCGCGCGCAGGCTGGACCCTTTTGAACGTCCTGACCGTCTTTGGCCCCGAAGG
GCTTGAACAAAGGAAAGCGG

Downstream 100 bases:

>100_bases
CGCCCGCCCCGGTCCACCTCCGTTACCCCGGATACGCAAAAGGCGGGGGCGCTCCCGCCCGTCGTCTGTGAATTGAAAAT
TCCCATCCGCCCGTTGGGCC

Product: putative transcriptional regulator, CadC

Products: NA

Alternate protein names: Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Transcriptional Regulator

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFA
DTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVL
AEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV

Sequences:

>Translated_233_residues
MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFA
DTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVL
AEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV
>Mature_232_residues
PDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFAD
TLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVLA
EARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25263; Mature: 25132

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDL
CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCC
TTQAEIKLLEILAQSGTAFADTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQ
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVLAEARLDDDVLSGAEIEAVIS
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEC
GKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHCC
>Mature Secondary Structure 
PDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDL
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCC
TTQAEIKLLEILAQSGTAFADTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQ
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVLAEARLDDDVLSGAEIEAVIS
HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEC
GKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA