| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082493
Identifier: 99082493
GI number: 99082493
Start: 2787233
End: 2787934
Strand: Direct
Name: 99082493
Synonym: TM1040_2653
Alternate gene names: NA
Gene position: 2787233-2787934 (Clockwise)
Preceding gene: 99082492
Following gene: 99082494
Centisome position: 87.08
GC content: 60.4
Gene sequence:
>702_bases ATGCCGGACGCAACTTTCTCCGTTTCTGAGGTCCGCCACGCCGGGTCCCGGGTGATCGCGCTTGGGATTGGCGCCATTGT GGCCCTTCTGGTCGTCGCGGGCACGGTGCTGCTTCTGACCCTGCCGGACGGCAATGCGTTCAATGCCCGCATTGAACGGC TCTTTGTGGAAAACGACCTCACCACCCAGGCCGAGATCAAGCTGCTGGAGATCCTCGCCCAGAGCGGCACCGCCTTTGCC GACACGCTGGCAAGCTACCGTATGGTGATCTTTGTGCTTTTGGTCTTTGCCACCGCGATGATGATTGCCGCCCTCGTGGT GCTGGCAATGCTGGTGATGCTGAACCGGCGCATGGCGCAGATCGAACGTGCCGGGATTCAGGTGACGGAACTGCTGATCA GCCGCGAGGAAAACACCGTTTACCTCAACAATATGGGCTTCAAGCTCACCCAGGCCGCGATGGAGACGCTCTCCGTCCTC GCCGAGGCGCGGCTTGATGATGATGTGCTCTCGGGTGCCGAGATCGAGGCGGTGATTTCCGGCAAATCCAGCCATGATTG CGAGGAAGCCGCCGGGGCGACCCGCATCAAACGGCTGCGCGACACCCTTGGCAATCAGATGATCAGCGAGCTGTTGGTGA AGAACATCGCCAAACGCGGCTATGTGCTGGCGATCAACAAGGATGTGATCCGCATGGTGTGA
Upstream 100 bases:
>100_bases GCCAAAGGCGAGGTGGCCGAACGCCTCTCGCGCGCAGGCTGGACCCTTTTGAACGTCCTGACCGTCTTTGGCCCCGAAGG GCTTGAACAAAGGAAAGCGG
Downstream 100 bases:
>100_bases CGCCCGCCCCGGTCCACCTCCGTTACCCCGGATACGCAAAAGGCGGGGGCGCTCCCGCCCGTCGTCTGTGAATTGAAAAT TCCCATCCGCCCGTTGGGCC
Product: putative transcriptional regulator, CadC
Products: NA
Alternate protein names: Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Transcriptional Regulator
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFA DTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVL AEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV
Sequences:
>Translated_233_residues MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFA DTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVL AEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV >Mature_232_residues PDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFAD TLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVLA EARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25263; Mature: 25132
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDL CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCC TTQAEIKLLEILAQSGTAFADTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQ CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVLAEARLDDDVLSGAEIEAVIS HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEC GKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHCC >Mature Secondary Structure PDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDGNAFNARIERLFVENDL CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCC TTQAEIKLLEILAQSGTAFADTLASYRMVIFVLLVFATAMMIAALVVLAMLVMLNRRMAQ CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVLAEARLDDDVLSGAEIEAVIS HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEC GKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAKRGYVLAINKDVIRMV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA