| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082484
Identifier: 99082484
GI number: 99082484
Start: 2778169
End: 2778696
Strand: Reverse
Name: 99082484
Synonym: TM1040_2644
Alternate gene names: NA
Gene position: 2778696-2778169 (Counterclockwise)
Preceding gene: 99082487
Following gene: 99082483
Centisome position: 86.81
GC content: 60.8
Gene sequence:
>528_bases ATGGCATATAGGCATTCCTCCACACGCGGTTTCAAACGCACGGGATCGTTGCTCAACGATCAGATTCGCAAGGCGGGCGA AAGCCGCGGCTTTGCGGTGTCACGGCTGTTGACCCATTGGGAAGAGATCGTCGGCCCGGAGCTGGCGGCCATGGCGCGCC CTGTGAAGGTCGGCTATGGGCGCGGCGGTTTTGGGGCGACGCTGACGGTGCTGACCACGGGGGCGATGGCGCCGATGCTG GAGATGCAAAAGGCGGCACTGCGCGAGAAGGTGAACGCGGTCTATGGCTATAACGCCATTTCCAAACTTCACATCACGCA GACCGCCCCAATCGGATTTGCCGACGGGCAGGTGGATTTTCGCTATGCGCCCAAGACGCGCAAACAGGAAGAGCCTGCGC CAGAGGATGTGGCCGCCGCCAAGGAGACGGCGACGGGTGTAGAGAATGACGACTTGCGCGCAGCTCTCGAGCGGCTTGGG CGCAATGTGCTGACACGACAAAAATCACTGCGAAAGGGGTATAAATGA
Upstream 100 bases:
>100_bases GGGGTGGTCACGCATTCTTTATCCTCTGGCCTCTGGGTTTGGCTGGTCTCTTGCACTCGGCCCTTTACAATAGGGCCGAG ACACACGCAAAACCACTGGT
Downstream 100 bases:
>100_bases CCCGCATCATGACAGGTATCTGCGCGGCCGTTGCCGTTGCAGCGGGCGTATACGCGATCAACAATTTCTCGGGCCGCGAA GACAACGCAAGCCTTTTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MAYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIVGPELAAMARPVKVGYGRGGFGATLTVLTTGAMAPML EMQKAALREKVNAVYGYNAISKLHITQTAPIGFADGQVDFRYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLG RNVLTRQKSLRKGYK
Sequences:
>Translated_175_residues MAYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIVGPELAAMARPVKVGYGRGGFGATLTVLTTGAMAPML EMQKAALREKVNAVYGYNAISKLHITQTAPIGFADGQVDFRYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLG RNVLTRQKSLRKGYK >Mature_174_residues AYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIVGPELAAMARPVKVGYGRGGFGATLTVLTTGAMAPMLE MQKAALREKVNAVYGYNAISKLHITQTAPIGFADGQVDFRYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLGR NVLTRQKSLRKGYK
Specific function: Unknown
COG id: COG5389
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19165; Mature: 19034
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIVGPELAAMARPVKVGYG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHCCCC RGGFGATLTVLTTGAMAPMLEMQKAALREKVNAVYGYNAISKLHITQTAPIGFADGQVDF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCEEE RYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLGRNVLTRQKSLRKGYK EECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIVGPELAAMARPVKVGYG CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHCCCC RGGFGATLTVLTTGAMAPMLEMQKAALREKVNAVYGYNAISKLHITQTAPIGFADGQVDF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEECCCCCCCCCCCEEE RYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLGRNVLTRQKSLRKGYK EECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA