Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082483

Identifier: 99082483

GI number: 99082483

Start: 2777471

End: 2778172

Strand: Reverse

Name: 99082483

Synonym: TM1040_2643

Alternate gene names: NA

Gene position: 2778172-2777471 (Counterclockwise)

Preceding gene: 99082484

Following gene: 99082477

Centisome position: 86.79

GC content: 59.26

Gene sequence:

>702_bases
ATGACCCGCATCATGACAGGTATCTGCGCGGCCGTTGCCGTTGCAGCGGGCGTATACGCGATCAACAATTTCTCGGGCCG
CGAAGACAACGCAAGCCTTTTGGACATCCAGCTGGTGAGCGCGGCCAATGCGCAAGAGAGCAGCCAGGGCGCCGAGGCGG
CAGAGGTGGACACCTCCACGATCATGGAAATGGTACAGGGCGCCGAAGACGCGCCTGTGACCTTGATCGAATATTCGTCC
TACACCTGCCCGCATTGCGCGAATTTCCACGCCGATGCCTATAAGAAGCTGAAGGCCGAATATATCGATACCGGCAAGGT
AAAGCTGGTCTACCGCGAGGTCTATTTCGACCGCTTTGGTCTCTGGGCGTCGATGGTGGCGCGCTGTGGTGGCGAAGAAA
AGTTCTTTGGCATCACCGATCTGATCTTCAAGCAGCAGGCCGAATGGACCCGTGCTGGCGGCCCTGCCGAGATGGTGGAA
GCGCTGAAAAAGATCGGTCGCGTGGCCGGTGTGGACGGCGACGCGCTGGAGGCCTGCCTGCAGGATGCCACCAAGGCACA
GACGCTGGTGACCTGGTATCAGGAGAACGCCACCAAGGATGACATCAGCTCGACCCCGTCTTTCATCCTCAACGGCACCA
AGATCGCCAACCAGCCCTATGAGGATCTGAAGGCGCTGATCGACGCCGAGCTTGAAGGCTAA

Upstream 100 bases:

>100_bases
AGACGGCGACGGGTGTAGAGAATGACGACTTGCGCGCAGCTCTCGAGCGGCTTGGGCGCAATGTGCTGACACGACAAAAA
TCACTGCGAAAGGGGTATAA

Downstream 100 bases:

>100_bases
AGAGATCCGTCGCTGACGGTTGTGCGCGCCGCTCTCCTAGTCGGGGGGCGGCGCGATGTCTTTGAGGCGGGCCAGAAGCG
TGTCGCCCTGCGCGACCCGC

Product: DsbA family thiol:disulfide interchange protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSS
YTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVE
ALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG

Sequences:

>Translated_233_residues
MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSS
YTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVE
ALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG
>Mature_232_residues
TRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSSY
TCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVEA
LKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG

Specific function: May be required for disulfide bond formation in some proteins [H]

COG id: COG1651

COG function: function code O; Protein-disulfide isomerase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR017937
- InterPro:   IPR012335 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25249; Mature: 25117

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTST
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCHHCCCCCHHHCCHHH
IMEMVQGAEDAPVTLIEYSSYTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFG
HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
LWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVEALKKIGRVAGVDGDALEACL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
QDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG
HHHHHHHHHHHHHHHCCCCCHHHCCCHHEECCCHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTST
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCHHCCCCCHHHCCHHH
IMEMVQGAEDAPVTLIEYSSYTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFG
HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH
LWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVEALKKIGRVAGVDGDALEACL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
QDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG
HHHHHHHHHHHHHHHCCCCCHHHCCCHHEECCCHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA