| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082483
Identifier: 99082483
GI number: 99082483
Start: 2777471
End: 2778172
Strand: Reverse
Name: 99082483
Synonym: TM1040_2643
Alternate gene names: NA
Gene position: 2778172-2777471 (Counterclockwise)
Preceding gene: 99082484
Following gene: 99082477
Centisome position: 86.79
GC content: 59.26
Gene sequence:
>702_bases ATGACCCGCATCATGACAGGTATCTGCGCGGCCGTTGCCGTTGCAGCGGGCGTATACGCGATCAACAATTTCTCGGGCCG CGAAGACAACGCAAGCCTTTTGGACATCCAGCTGGTGAGCGCGGCCAATGCGCAAGAGAGCAGCCAGGGCGCCGAGGCGG CAGAGGTGGACACCTCCACGATCATGGAAATGGTACAGGGCGCCGAAGACGCGCCTGTGACCTTGATCGAATATTCGTCC TACACCTGCCCGCATTGCGCGAATTTCCACGCCGATGCCTATAAGAAGCTGAAGGCCGAATATATCGATACCGGCAAGGT AAAGCTGGTCTACCGCGAGGTCTATTTCGACCGCTTTGGTCTCTGGGCGTCGATGGTGGCGCGCTGTGGTGGCGAAGAAA AGTTCTTTGGCATCACCGATCTGATCTTCAAGCAGCAGGCCGAATGGACCCGTGCTGGCGGCCCTGCCGAGATGGTGGAA GCGCTGAAAAAGATCGGTCGCGTGGCCGGTGTGGACGGCGACGCGCTGGAGGCCTGCCTGCAGGATGCCACCAAGGCACA GACGCTGGTGACCTGGTATCAGGAGAACGCCACCAAGGATGACATCAGCTCGACCCCGTCTTTCATCCTCAACGGCACCA AGATCGCCAACCAGCCCTATGAGGATCTGAAGGCGCTGATCGACGCCGAGCTTGAAGGCTAA
Upstream 100 bases:
>100_bases AGACGGCGACGGGTGTAGAGAATGACGACTTGCGCGCAGCTCTCGAGCGGCTTGGGCGCAATGTGCTGACACGACAAAAA TCACTGCGAAAGGGGTATAA
Downstream 100 bases:
>100_bases AGAGATCCGTCGCTGACGGTTGTGCGCGCCGCTCTCCTAGTCGGGGGGCGGCGCGATGTCTTTGAGGCGGGCCAGAAGCG TGTCGCCCTGCGCGACCCGC
Product: DsbA family thiol:disulfide interchange protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSS YTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVE ALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG
Sequences:
>Translated_233_residues MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSS YTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVE ALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG >Mature_232_residues TRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSSY TCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVEA LKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG
Specific function: May be required for disulfide bond formation in some proteins [H]
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR012335 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25249; Mature: 25117
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTST CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCHHCCCCCHHHCCHHH IMEMVQGAEDAPVTLIEYSSYTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFG HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH LWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVEALKKIGRVAGVDGDALEACL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH QDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG HHHHHHHHHHHHHHHCCCCCHHHCCCHHEECCCHHCCCCHHHHHHHHHHCCCC >Mature Secondary Structure TRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANAQESSQGAEAAEVDTST CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCHHCCCCCHHHCCHHH IMEMVQGAEDAPVTLIEYSSYTCPHCANFHADAYKKLKAEYIDTGKVKLVYREVYFDRFG HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHH LWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVEALKKIGRVAGVDGDALEACL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH QDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQPYEDLKALIDAELEG HHHHHHHHHHHHHHHCCCCCHHHCCCHHEECCCHHCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA