| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082375
Identifier: 99082375
GI number: 99082375
Start: 2675064
End: 2675777
Strand: Direct
Name: 99082375
Synonym: TM1040_2535
Alternate gene names: NA
Gene position: 2675064-2675777 (Clockwise)
Preceding gene: 99082369
Following gene: 99082376
Centisome position: 83.57
GC content: 58.82
Gene sequence:
>714_bases ATGTCTAGAACGCTCACGACCATCGGTTTTGACGCAGATGATACGCTTTGGCACAACGAACGCTTCTTTCGTGTCACTCA GGATCGCTTTGCCGAACTCCTTATGGATCACACATCCGAAGACATGGGGCCGGAAGCGCTGGATCGCAAGCTGCTGGACG CAGAGAAACGCAATCTTGGCGCCTATGGCTACGGGGTCAAAGGCTTCACGCTCTCGATGATTGAAACCGCGATAGAGGTG ACTGAGGGGCGCGTTCCGGCGGCGGTCATCAAAGAACTGCTGGAGGCTGGCCAGATGATGCTCTCCTTTCCGATCGAATT GCTACCCCATGCGCAGACCGCAGTTGAAACCCTCGCCAAAGAGCACCGAGTCATCCTGATTACCAAGGGCGATCTGCTCG ATCAGGAGCGCAAGCTCGCCCAATCTGGGCTGGGCGAGTTGTTCGACGCGGTCGAGGTGGTCTCAGAGAAGACACCGCAG GTCTATATCGACATTTTTGAGCGTCACGGTGACGGCGCCGCGCGGGCCTTGATGGCCGGAAACTCCATGCGTTCCGATGT GGTTCCGGTTGTGCGGGCTGGCGGCCACGGGGTCTATGTCCCGCATGGCGCAATTTGGGAAGTCGAGGCCGCAGAGCCCC CCACAGAAAGCCCGCGCTATCACGAAATCCCCGACCTCGGCGCGCTCCCTGAGTTGGTTGAACGACTCGCCTAA
Upstream 100 bases:
>100_bases GCATTAGCATAGGATCAACAGTTTCCAGTGGTGCATCTGATTTCGTCACCGGCTTATATAGCGGAAGACCCCACAAGGAA AAGAGATTGAGGCCGGGATA
Downstream 100 bases:
>100_bases AGGGGGAATTCCGAGGGTTATGTTAACCCTTCATTCATAACTGTGACTTTAGCGCTTCATTTGATCGCTAAATATCGGCG TGATCCCGCTTTTTGCACCA
Product: haloacid dehalogenase-like hydrolase
Products: NA
Alternate protein names: Haloacid Dehalogenase Domain Protein Hydrolase; HAD Superfamily Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Haloacid Dehalogenase Domain-Containing Protein Hydrolase; Hydrolase Haloacid Dehalogenase Family; Haloacid Dehydrogenase Hydrolase; Hydrolase Family Protein; Halogenase-Like Hydrolase; Haloacid Dehalogenase-Like Family Protein; Hydrolase Haloacid Dehalogenase-Like Family; Haloacid Dehalogenase Family Hydrolase; Hydrolase Haloacid Dehalogenase Family Protein; HAD Family Phosphatase; Hydrolase Of HAD Superfamily
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSRTLTTIGFDADDTLWHNERFFRVTQDRFAELLMDHTSEDMGPEALDRKLLDAEKRNLGAYGYGVKGFTLSMIETAIEV TEGRVPAAVIKELLEAGQMMLSFPIELLPHAQTAVETLAKEHRVILITKGDLLDQERKLAQSGLGELFDAVEVVSEKTPQ VYIDIFERHGDGAARALMAGNSMRSDVVPVVRAGGHGVYVPHGAIWEVEAAEPPTESPRYHEIPDLGALPELVERLA
Sequences:
>Translated_237_residues MSRTLTTIGFDADDTLWHNERFFRVTQDRFAELLMDHTSEDMGPEALDRKLLDAEKRNLGAYGYGVKGFTLSMIETAIEV TEGRVPAAVIKELLEAGQMMLSFPIELLPHAQTAVETLAKEHRVILITKGDLLDQERKLAQSGLGELFDAVEVVSEKTPQ VYIDIFERHGDGAARALMAGNSMRSDVVPVVRAGGHGVYVPHGAIWEVEAAEPPTESPRYHEIPDLGALPELVERLA >Mature_236_residues SRTLTTIGFDADDTLWHNERFFRVTQDRFAELLMDHTSEDMGPEALDRKLLDAEKRNLGAYGYGVKGFTLSMIETAIEVT EGRVPAAVIKELLEAGQMMLSFPIELLPHAQTAVETLAKEHRVILITKGDLLDQERKLAQSGLGELFDAVEVVSEKTPQV YIDIFERHGDGAARALMAGNSMRSDVVPVVRAGGHGVYVPHGAIWEVEAAEPPTESPRYHEIPDLGALPELVERLA
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26189; Mature: 26058
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTLTTIGFDADDTLWHNERFFRVTQDRFAELLMDHTSEDMGPEALDRKLLDAEKRNLG CCCEEEEECCCCCCCEECCCHHEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC AYGYGVKGFTLSMIETAIEVTEGRVPAAVIKELLEAGQMMLSFPIELLPHAQTAVETLAK CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHH EHRVILITKGDLLDQERKLAQSGLGELFDAVEVVSEKTPQVYIDIFERHGDGAARALMAG CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHCC NSMRSDVVPVVRAGGHGVYVPHGAIWEVEAAEPPTESPRYHEIPDLGALPELVERLA CCCCCCCHHHEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC >Mature Secondary Structure SRTLTTIGFDADDTLWHNERFFRVTQDRFAELLMDHTSEDMGPEALDRKLLDAEKRNLG CCEEEEECCCCCCCEECCCHHEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC AYGYGVKGFTLSMIETAIEVTEGRVPAAVIKELLEAGQMMLSFPIELLPHAQTAVETLAK CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHH EHRVILITKGDLLDQERKLAQSGLGELFDAVEVVSEKTPQVYIDIFERHGDGAARALMAG CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHCC NSMRSDVVPVVRAGGHGVYVPHGAIWEVEAAEPPTESPRYHEIPDLGALPELVERLA CCCCCCCHHHEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA