| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is rpmI [H]
Identifier: 99082354
GI number: 99082354
Start: 2654701
End: 2654901
Strand: Reverse
Name: rpmI [H]
Synonym: TM1040_2514
Alternate gene names: 99082354
Gene position: 2654901-2654701 (Counterclockwise)
Preceding gene: 99082355
Following gene: 99082353
Centisome position: 82.94
GC content: 55.72
Gene sequence:
>201_bases ATGCCCAAGATGAAGACAAAATCGAGCGCCAAAAAGCGCTTTAAAGTGACCGCGACCGGCAAGGTCATGGCTGGTCAGGC CGGCAAGCGCCACGGCATGATCAAACGTCACAAGAAATTTATCCGTGATGCACGCGGAACCACCACCCTGTCCGCACCGG ACGCAAAGATCGTCAAGGGCTTCATGCCCTACGACCGCTAA
Upstream 100 bases:
>100_bases TTTGTGAGTGGCTGACGTAAAGGGCAGCCCTGTTCGCGCGACCGGCCAGTGTGGCATGCCGAGTCGCGTGTGTAGCGAAC CTACGAATAAGGAGACGGAA
Downstream 100 bases:
>100_bases GAGGAGATCTGAGATATGTCCCGCGTTAAAGGTGGTACCGTCACTCACGCCCGTCATAAGAAGGTCATCAAGGCAGCCAA AGGTTACTACGGCCGTCGCA
Product: 50S ribosomal protein L35
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 66; Mature: 65
Protein sequence:
>66_residues MPKMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRHKKFIRDARGTTTLSAPDAKIVKGFMPYDR
Sequences:
>Translated_66_residues MPKMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRHKKFIRDARGTTTLSAPDAKIVKGFMPYDR >Mature_65_residues PKMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRHKKFIRDARGTTTLSAPDAKIVKGFMPYDR
Specific function: Unknown
COG id: COG0291
COG function: function code J; Ribosomal protein L35
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribosomal protein L35P family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021137 - InterPro: IPR018265 - InterPro: IPR001706 [H]
Pfam domain/function: PF01632 Ribosomal_L35p [H]
EC number: NA
Molecular weight: Translated: 7379; Mature: 7248
Theoretical pI: Translated: 12.08; Mature: 12.08
Prosite motif: PS00936 RIBOSOMAL_L35
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 7.6 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRHKKFIRDARGTTTLSAPDAKIVKG CCCCCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHC FMPYDR CCCCCC >Mature Secondary Structure PKMKTKSSAKKRFKVTATGKVMAGQAGKRHGMIKRHKKFIRDARGTTTLSAPDAKIVKG CCCCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHC FMPYDR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA