| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082343
Identifier: 99082343
GI number: 99082343
Start: 2645583
End: 2646305
Strand: Direct
Name: 99082343
Synonym: TM1040_2503
Alternate gene names: NA
Gene position: 2645583-2646305 (Clockwise)
Preceding gene: 99082336
Following gene: 99082344
Centisome position: 82.65
GC content: 58.51
Gene sequence:
>723_bases ATGATTTGGATCGAGCGCCTGAGCCAGTTTTCTACGTGGGATTTCATAAGCCTGGCCTGCTATTTGCTGGGCTGGCTCTG GATTGGCTGGCGCATCGAAAATCCCAGCAAATCGCGCCCGTCCGTCTCGATCCTGATGGCAGATTTTCGACGCGAGTGGA TGAAAGAGATGGTGACGCGCTCGCCCCGGATATTTGATTCGCAAGTCATCTCCTCCCTGCGCCAAGCCACGGCATTCTTC GCGTCGGCCACCATGCTCGCGCTTGGGGCGGGGCTTGCGCTCATTGGCAACACAGATCAGCTTGCAGGTGTTGCGCAGGA TCTGGCACTCGGGCAAACCCCGGATTTTGTCTGGGAGATCAAGATCATCCTCGTTCTGGCTGCGCTCACCAATGCGTTTC TCTCTTTTGTCTGGTCGCATCGGCTCTTTGGCTATTGTTCGGTGCTGATGGCCGCCGTCCCCAATGAACCGAGCGACCCC CGTGCCTATCCGCGCGCCTGCCAAGCCGCAGAGATCAACATCACTGCCGCGCGCAGCTTCAATCGCGGTCTGCGCGCCAC GTATTTTTCACTGGCCGGACTGGCATGGCTGGTGAGCGCCGAAGCCCTCATTATCGCCACGGTCATCACGCTGGCCGTGC TCTACAGGCGAGAGTTCATTTCCCGGTCACGTCGCATCCTGATGCAATCAAAACCCGAAACCACGTCGCCCACCGAATTG TGA
Upstream 100 bases:
>100_bases TGGGGGGTGGCATCTCCATGCGGGCTCTCCTCTTTGGTAAAATAATATTACCAATCTATCACCTCTGGCAAGGCTGAACT GACTAAGCTAGGGTCGCCCT
Downstream 100 bases:
>100_bases CCTGCACAGGTCGCAACATCGGCTAGACTGGCCCCATGCTGAGATATGTCCTGATCCCGTTCTTGGGCCTGGCCGGCCCA TTTGCTGCCCATGCTGCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MIWIERLSQFSTWDFISLACYLLGWLWIGWRIENPSKSRPSVSILMADFRREWMKEMVTRSPRIFDSQVISSLRQATAFF ASATMLALGAGLALIGNTDQLAGVAQDLALGQTPDFVWEIKIILVLAALTNAFLSFVWSHRLFGYCSVLMAAVPNEPSDP RAYPRACQAAEINITAARSFNRGLRATYFSLAGLAWLVSAEALIIATVITLAVLYRREFISRSRRILMQSKPETTSPTEL
Sequences:
>Translated_240_residues MIWIERLSQFSTWDFISLACYLLGWLWIGWRIENPSKSRPSVSILMADFRREWMKEMVTRSPRIFDSQVISSLRQATAFF ASATMLALGAGLALIGNTDQLAGVAQDLALGQTPDFVWEIKIILVLAALTNAFLSFVWSHRLFGYCSVLMAAVPNEPSDP RAYPRACQAAEINITAARSFNRGLRATYFSLAGLAWLVSAEALIIATVITLAVLYRREFISRSRRILMQSKPETTSPTEL >Mature_240_residues MIWIERLSQFSTWDFISLACYLLGWLWIGWRIENPSKSRPSVSILMADFRREWMKEMVTRSPRIFDSQVISSLRQATAFF ASATMLALGAGLALIGNTDQLAGVAQDLALGQTPDFVWEIKIILVLAALTNAFLSFVWSHRLFGYCSVLMAAVPNEPSDP RAYPRACQAAEINITAARSFNRGLRATYFSLAGLAWLVSAEALIIATVITLAVLYRREFISRSRRILMQSKPETTSPTEL
Specific function: Unknown
COG id: COG3821
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26918; Mature: 26918
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIWIERLSQFSTWDFISLACYLLGWLWIGWRIENPSKSRPSVSILMADFRREWMKEMVTR CCHHHHHHHCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC SPRIFDSQVISSLRQATAFFASATMLALGAGLALIGNTDQLAGVAQDLALGQTPDFVWEI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCCHHHHH KIILVLAALTNAFLSFVWSHRLFGYCSVLMAAVPNEPSDPRAYPRACQAAEINITAARSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEEEEHHHH NRGLRATYFSLAGLAWLVSAEALIIATVITLAVLYRREFISRSRRILMQSKPETTSPTEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MIWIERLSQFSTWDFISLACYLLGWLWIGWRIENPSKSRPSVSILMADFRREWMKEMVTR CCHHHHHHHCCCHHHHHHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC SPRIFDSQVISSLRQATAFFASATMLALGAGLALIGNTDQLAGVAQDLALGQTPDFVWEI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCCHHHHH KIILVLAALTNAFLSFVWSHRLFGYCSVLMAAVPNEPSDPRAYPRACQAAEINITAARSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEEEEHHHH NRGLRATYFSLAGLAWLVSAEALIIATVITLAVLYRREFISRSRRILMQSKPETTSPTEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA