Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082337

Identifier: 99082337

GI number: 99082337

Start: 2639283

End: 2639888

Strand: Reverse

Name: 99082337

Synonym: TM1040_2497

Alternate gene names: NA

Gene position: 2639888-2639283 (Counterclockwise)

Preceding gene: 99082338

Following gene: 99082334

Centisome position: 82.47

GC content: 60.4

Gene sequence:

>606_bases
ATGACCCTGGCCGAGATGACATCTACCAGTACCCGCACACAGTTGATCGAAAGCGCTTGCCGCTTGTTTGCGGCACATGG
GTATGCCGGGGCCTCCATCTCAGCCATCGCACAGGAACTCGGCCTCAGCAAACAGGCGCTGTTGCACCATTTTGGGAGCA
AGAACGCGCTCTATGCTTTGGCGGTTGAACAGGCTGCGTCGTCGGTACTTCAACTGCTGTTTGATGCGATGGAAGATGAC
CGCCCGCCAGAAGAGCAACTGGAGACGTTCTTTGCAGCTTACCAATCGGCGCTGCAGGCGGATTGCGCCTCGGCCCAGAT
CGTGCTGCGAGAGCTCTTGGATCAGGCGCTGCCACGTGACGGAGGTACGTCTTTTGCGACCTTGTTTGAAAGCCTCGTCG
CCACCGTGCAAGCCACCGAGCGCTGGGAGGGCAAAGGCGTTGCCGGGGCATTGGGCGTGGTGACGCAGCTCTTGGGAGCT
GCGTCCCTGATGGGATGTACGCACGACGCCTGGGGGCGATATTACGATGCCAGCGTGCTGAGTACGGCTAAGGTTCAGGC
CCGCGCCCCATTTGCCGAGATGGTCTCAGGCGTTTTGCGCGGCTGA

Upstream 100 bases:

>100_bases
GCTCCCGGCTGGTTAGACGGGAGCTCTTTTTATTCATGGATTTACGTTATTTACCAAGCGGTAGGTTGTCCTGCGGCAGA
ATGCCTGCCTTAATGGATGT

Downstream 100 bases:

>100_bases
ACCCGGTTTAGCACGGGCCTCTCTGTTCAGCAGATAGGCGCTTGCAACAATGATCAGCGCGGTGCCCAGCCACATGTTGC
CATCCGGCAAGAACCCAAAG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTLAEMTSTSTRTQLIESACRLFAAHGYAGASISAIAQELGLSKQALLHHFGSKNALYALAVEQAASSVLQLLFDAMEDD
RPPEEQLETFFAAYQSALQADCASAQIVLRELLDQALPRDGGTSFATLFESLVATVQATERWEGKGVAGALGVVTQLLGA
ASLMGCTHDAWGRYYDASVLSTAKVQARAPFAEMVSGVLRG

Sequences:

>Translated_201_residues
MTLAEMTSTSTRTQLIESACRLFAAHGYAGASISAIAQELGLSKQALLHHFGSKNALYALAVEQAASSVLQLLFDAMEDD
RPPEEQLETFFAAYQSALQADCASAQIVLRELLDQALPRDGGTSFATLFESLVATVQATERWEGKGVAGALGVVTQLLGA
ASLMGCTHDAWGRYYDASVLSTAKVQARAPFAEMVSGVLRG
>Mature_200_residues
TLAEMTSTSTRTQLIESACRLFAAHGYAGASISAIAQELGLSKQALLHHFGSKNALYALAVEQAASSVLQLLFDAMEDDR
PPEEQLETFFAAYQSALQADCASAQIVLRELLDQALPRDGGTSFATLFESLVATVQATERWEGKGVAGALGVVTQLLGAA
SLMGCTHDAWGRYYDASVLSTAKVQARAPFAEMVSGVLRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21306; Mature: 21175

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAEMTSTSTRTQLIESACRLFAAHGYAGASISAIAQELGLSKQALLHHFGSKNALYAL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
AVEQAASSVLQLLFDAMEDDRPPEEQLETFFAAYQSALQADCASAQIVLRELLDQALPRD
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GGTSFATLFESLVATVQATERWEGKGVAGALGVVTQLLGAASLMGCTHDAWGRYYDASVL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
STAKVQARAPFAEMVSGVLRG
HHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
TLAEMTSTSTRTQLIESACRLFAAHGYAGASISAIAQELGLSKQALLHHFGSKNALYAL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
AVEQAASSVLQLLFDAMEDDRPPEEQLETFFAAYQSALQADCASAQIVLRELLDQALPRD
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GGTSFATLFESLVATVQATERWEGKGVAGALGVVTQLLGAASLMGCTHDAWGRYYDASVL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
STAKVQARAPFAEMVSGVLRG
HHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA