| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082299
Identifier: 99082299
GI number: 99082299
Start: 2601478
End: 2602539
Strand: Reverse
Name: 99082299
Synonym: TM1040_2459
Alternate gene names: NA
Gene position: 2602539-2601478 (Counterclockwise)
Preceding gene: 99082300
Following gene: 99082297
Centisome position: 81.31
GC content: 62.71
Gene sequence:
>1062_bases ATGACCAAGGGAGAGGCTTTTCTGGATCGTCTTGGGATTTCGCTGCCTCTGATACAGGCGCCGATGGCCGGGGTCTCAAC TCCGAGGCTCGCAGCAGCAGTGACGGACGCCGGCGCGCTTGGTTCGATCGGGGTGGGGGCCCTGGATGCTAGCGCGACTC GCAAGCAGATCGAAGAGCTGCAGCATCTGACCAATGGGCCCTTCAATGTGAATTTCTTTTGCCATCAGACGCCGCAGCGC AACCCTGAGATCGAGGGTCGCTGGATCCAACGCAGCGCGCCTTTGTTTGCCCGCATGCAGGCGGAGCCACCCAAAGAGCT ATCTGAAATATATACCAGTTTTCGGGATACAGACGCATTTCTCGAGGCGGTGCTGGACCTGCGGCCTGCGGTGGTGAGTT TCCACTTTGGTTTGCCCAAGCCCCATCAGATCAGCGCCATGAAGGCCGCAGGGCTGACACTGCTGGCGAGCGCCACCTCG CTGGAGGAGGCCCGCCAGATCGAAGCGGCGGGGCTGCATGGGATCATAGCACAAGGGTGGGAGGCCGGCGGCCACCGGGG TGTTTTTGAACCTGGCGCCTTGGATGCACGCCTTGGCCTGCTGGAGCTGGTTGCGGTGCTGGCCGAACAGACCACCCTGC CGGTGATCGCAGCCGGTGGCCTGATGACGGGCGCGGAGATCGCGCGGGCGCTCTCGGCGGGGGCAGTCGCGGCACAGCTC GGCACCGCGTTTATCGGCTGCCCGGAGAGCAACGCCGATGCTGCCTATCGGGACAGGCTGGCGCTTGGAGATGAGACGGT GATGACCGCAGCGATCTCCGGTCGTCCGGCGCGATGTCTCAGCAATGCCTTCACCGAATGGGCCTCAGATGTCCCGATTG CAGAAATTCCAGCCTACCCATGCGCTTATGATCTTGGCAAAGCCCTGAATGCAGTGGCAACGGCCAAGGGCGTCAGCAGT TTTGGCTCGCAGTGGGCAGGCATGGGCGCAGATCGCGCTCGGTTTATGCCCGCGCAGGCCCTGGTGCAGACCTTGATGGC TGAACTTGCCGCTACAATCTGA
Upstream 100 bases:
>100_bases AAGCGAGGGGCTTTTTTCTCCGACCCTGTCGGAGTGGCCTTCCCGGCTGCATTGAGCCATTGTGATGGCAATCGAGATCA CACGGCGGAGGGATGTTGCT
Downstream 100 bases:
>100_bases AATGTGGCGTGTTCTCCGTCGGGCGAGGAGGACCCTCTCGTTCGGCTGCGCCAATGAACGAGAGGGCTCTGTTCAGAGCG TGGCCGCGAGGCGGGTGCCC
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MTKGEAFLDRLGISLPLIQAPMAGVSTPRLAAAVTDAGALGSIGVGALDASATRKQIEELQHLTNGPFNVNFFCHQTPQR NPEIEGRWIQRSAPLFARMQAEPPKELSEIYTSFRDTDAFLEAVLDLRPAVVSFHFGLPKPHQISAMKAAGLTLLASATS LEEARQIEAAGLHGIIAQGWEAGGHRGVFEPGALDARLGLLELVAVLAEQTTLPVIAAGGLMTGAEIARALSAGAVAAQL GTAFIGCPESNADAAYRDRLALGDETVMTAAISGRPARCLSNAFTEWASDVPIAEIPAYPCAYDLGKALNAVATAKGVSS FGSQWAGMGADRARFMPAQALVQTLMAELAATI
Sequences:
>Translated_353_residues MTKGEAFLDRLGISLPLIQAPMAGVSTPRLAAAVTDAGALGSIGVGALDASATRKQIEELQHLTNGPFNVNFFCHQTPQR NPEIEGRWIQRSAPLFARMQAEPPKELSEIYTSFRDTDAFLEAVLDLRPAVVSFHFGLPKPHQISAMKAAGLTLLASATS LEEARQIEAAGLHGIIAQGWEAGGHRGVFEPGALDARLGLLELVAVLAEQTTLPVIAAGGLMTGAEIARALSAGAVAAQL GTAFIGCPESNADAAYRDRLALGDETVMTAAISGRPARCLSNAFTEWASDVPIAEIPAYPCAYDLGKALNAVATAKGVSS FGSQWAGMGADRARFMPAQALVQTLMAELAATI >Mature_352_residues TKGEAFLDRLGISLPLIQAPMAGVSTPRLAAAVTDAGALGSIGVGALDASATRKQIEELQHLTNGPFNVNFFCHQTPQRN PEIEGRWIQRSAPLFARMQAEPPKELSEIYTSFRDTDAFLEAVLDLRPAVVSFHFGLPKPHQISAMKAAGLTLLASATSL EEARQIEAAGLHGIIAQGWEAGGHRGVFEPGALDARLGLLELVAVLAEQTTLPVIAAGGLMTGAEIARALSAGAVAAQLG TAFIGCPESNADAAYRDRLALGDETVMTAAISGRPARCLSNAFTEWASDVPIAEIPAYPCAYDLGKALNAVATAKGVSSF GSQWAGMGADRARFMPAQALVQTLMAELAATI
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322609, Length=338, Percent_Identity=34.3195266272189, Blast_Score=167, Evalue=2e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 36902; Mature: 36770
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKGEAFLDRLGISLPLIQAPMAGVSTPRLAAAVTDAGALGSIGVGALDASATRKQIEEL CCCHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH QHLTNGPFNVNFFCHQTPQRNPEIEGRWIQRSAPLFARMQAEPPKELSEIYTSFRDTDAF HHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHEECCCCCHHHHHHHHHHHCCHHHH LEAVLDLRPAVVSFHFGLPKPHQISAMKAAGLTLLASATSLEEARQIEAAGLHGIIAQGW HHHHHHHCHHHHEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHCC EAGGHRGVFEPGALDARLGLLELVAVLAEQTTLPVIAAGGLMTGAEIARALSAGAVAAQL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHH GTAFIGCPESNADAAYRDRLALGDETVMTAAISGRPARCLSNAFTEWASDVPIAEIPAYP HHHEEECCCCCCCHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCC CAYDLGKALNAVATAKGVSSFGSQWAGMGADRARFMPAQALVQTLMAELAATI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TKGEAFLDRLGISLPLIQAPMAGVSTPRLAAAVTDAGALGSIGVGALDASATRKQIEEL CCHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH QHLTNGPFNVNFFCHQTPQRNPEIEGRWIQRSAPLFARMQAEPPKELSEIYTSFRDTDAF HHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCHHEECCCCCHHHHHHHHHHHCCHHHH LEAVLDLRPAVVSFHFGLPKPHQISAMKAAGLTLLASATSLEEARQIEAAGLHGIIAQGW HHHHHHHCHHHHEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHCC EAGGHRGVFEPGALDARLGLLELVAVLAEQTTLPVIAAGGLMTGAEIARALSAGAVAAQL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHH GTAFIGCPESNADAAYRDRLALGDETVMTAAISGRPARCLSNAFTEWASDVPIAEIPAYP HHHEEECCCCCCCHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCC CAYDLGKALNAVATAKGVSSFGSQWAGMGADRARFMPAQALVQTLMAELAATI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA