Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082248

Identifier: 99082248

GI number: 99082248

Start: 2546676

End: 2548091

Strand: Direct

Name: 99082248

Synonym: TM1040_2408

Alternate gene names: NA

Gene position: 2546676-2548091 (Clockwise)

Preceding gene: 99082246

Following gene: 99082253

Centisome position: 79.56

GC content: 60.03

Gene sequence:

>1416_bases
TTGACCTCCTGCCAGCGCGGACTTAGCCTTGGGACGACCCTCAATGGCTCGACCTGGATCCCAATGACACTCAGTACCAC
CAATCAGAGCCTGATGGCGCGCGTTGTGCGTTCGACGTCATGGATCGTTCTGGGGTTTGGGACTGGCCAGATCCTGCGAC
TCGGGTCGAATTTGTTGCTGACGCGCATCCTCTTTCCCGAAGCCTTTGGGCTCATGGCTCTGGTCACTGTGATCATCATT
GGCCTCTCGCTGTTTTCGGATATGGGCATTTCCAATGCCATCGCGCAAAACCCCCGAGGCGATGAGCCGGATTTTCTCGA
CTCCGCCTGGACCGTTCAAATTATCCGGGGCGGGCTCCTGTGGCTGCTGACCTGCGCCCTCGCCCTGCCTGCCGCTTCTT
TTTATGACGCCCCCGAACTGGCCTATTGCCTGCCGATCGCGGGGTTTAGTCTGGTCCTACAGGGGCTTTTACCGACACGG
GTCGAGACGGCGTATCGCCATCTCCTTGTAGGGCGGGTGACGGCGATCAACCTCATGGCACAGGCCTGTGGCATCCTCTG
CATGGTGACACTTGCCATCTGGACCCAATCGGTGATCGCACTCGCGATTGGCACTGTCGTTCAGGAAGGTGCCAAACTGG
CATTTGTGCACTGGACGCTACCCGGGCGGCGCAACAGCCTGCGGTGGGAGCCCGCAGCCACGCATGAGCTGATCGGCATG
GGCAAGTGGATCTTCCTTTCCACGGCCTGCTTCTTTCTCACGACCCAGGGCGACCGGGCGATCCTGGGCAAATACCTCTC
GCTTGAGGCGATGGGCATCTACAATATCGCGTTCTTTCTGGCGAATTTTCCAGTCCAACTGGGCCAGGACGTCAATCAAC
GCCTCATGATCCCGGTCTATCGCGACAAGCCAGCGCTTGAGAGTGACGAAAACCGGCGCAAACAGCGCCAGCTTCGCTAC
GCGCTCACGGGGGGGATCCTGTCGATCCTGTGGCTGATGGCATGGATTGGTCCGTGGCTTGTGGAGCTCTTGTATGATGA
TCGCTATGCGGCGGCCGGGCCGGTGATCGTTCTGCTTGCGAGCAGTCTGGCCCCGTCGATCATCGTCCTGACCTACGATC
GTGCCGCGCTGGCTGCTGGCGACACCAAGCGATTCTTCTTTTACACGGCCACCCGCGCCTTTGTTCAGACTGCACTGTTT
CTGGCCGGGGTCACCCAGTTTGGACTGGTGGGAGGCATTGCGGCGATGGGGCTGGCTGTTTTCTGCTCCTACCCGACATT
GATGCGACACACGCGCCCTTACCGGGCTCAGGACCCCGGGCACGATCTGGTCTATCTGACCGCCAGCCTCGTGATGTGTG
GGAGCGCACTCTGGTACCACTGGCCCAAAATCGCAGCCAGTGTCGGGGTCATGTAA

Upstream 100 bases:

>100_bases
GGATCACCGGATTTTGCCCAGACTGAACCACCTCGCGCGCTCTTTTGCGCACACCCGTGGTCCAAAAGGCTACCCCACCC
CATCTGCCCCGGTGCGGCGA

Downstream 100 bases:

>100_bases
CCAAATGCCTAGCTACGCGCGTGCCGTTCCGTGCCGCGTCCGCCCAGCGCAAAGAGGCGTGCAAACAGACCTTTTTTGCG
CGTCGTCAGAACCGGGATCG

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: Polysaccharide Export Protein; Biosynthesis Of Teichuronic Acid; Export Protein; Colanic Acid Exporter

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFGLMALVTVIII
GLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTR
VETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM
GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRY
ALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALF
LAGVTQFGLVGGIAAMGLAVFCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM

Sequences:

>Translated_471_residues
MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFGLMALVTVIII
GLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTR
VETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM
GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRY
ALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALF
LAGVTQFGLVGGIAAMGLAVFCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM
>Mature_470_residues
TSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLLTRILFPEAFGLMALVTVIIIG
LSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLLWLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTRV
ETAYRHLLVGRVTAINLMAQACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGMG
KWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVYRDKPALESDENRRKQRQLRYA
LTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLASSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFL
AGVTQFGLVGGIAAMGLAVFCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51542; Mature: 51411

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLL
CCCCHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHCCHHHH
TRILFPEAFGLMALVTVIIIGLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHCCHHHHHHHHHHHH
WLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTRVETAYRHLLVGRVTAINLMA
HHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHC
GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVY
CHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEE
RDKPALESDENRRKQRQLRYALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
SSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFLAGVTQFGLVGGIAAMGLAV
HHCCCEEEEEEECCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM
HHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSCQRGLSLGTTLNGSTWIPMTLSTTNQSLMARVVRSTSWIVLGFGTGQILRLGSNLLL
CCCHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHHHCCHHHH
TRILFPEAFGLMALVTVIIIGLSLFSDMGISNAIAQNPRGDEPDFLDSAWTVQIIRGGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHCCHHHHHHHHHHHH
WLLTCALALPAASFYDAPELAYCLPIAGFSLVLQGLLPTRVETAYRHLLVGRVTAINLMA
HHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QACGILCMVTLAIWTQSVIALAIGTVVQEGAKLAFVHWTLPGRRNSLRWEPAATHELIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHC
GKWIFLSTACFFLTTQGDRAILGKYLSLEAMGIYNIAFFLANFPVQLGQDVNQRLMIPVY
CHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEE
RDKPALESDENRRKQRQLRYALTGGILSILWLMAWIGPWLVELLYDDRYAAAGPVIVLLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
SSLAPSIIVLTYDRAALAAGDTKRFFFYTATRAFVQTALFLAGVTQFGLVGGIAAMGLAV
HHCCCEEEEEEECCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCSYPTLMRHTRPYRAQDPGHDLVYLTASLVMCGSALWYHWPKIAASVGVM
HHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA