Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99082223

Identifier: 99082223

GI number: 99082223

Start: 2503459

End: 2503764

Strand: Direct

Name: 99082223

Synonym: TM1040_2383

Alternate gene names: NA

Gene position: 2503459-2503764 (Clockwise)

Preceding gene: 99082222

Following gene: 99082225

Centisome position: 78.21

GC content: 62.42

Gene sequence:

>306_bases
ATGTCGATGAGAGAGGACGGCCCGTCGATCAACCAACGGCAGCTTTCTGCTGTCGATGGCTACAAGAATTTCAGCAATAG
CATGGCCTCGCGTCAACTCGCGCGCGCCATGGCGGAGCTACGCGAATCCGCTGCAGGCGCCAACTATCCCAGGGAAGTGG
CCCCCTCCGACAAGCCCGCACCGAGCCCACTTCCGGCTGGTGATCGGGACATCGCGCAGCAAGCCTTTCTCGCCCACTGC
ACTCAGCACCAGATGTCTGGCCGAGAGGCCAGCCGGCTCTATGCCGGTGCCAAGGCGTTCATCTGA

Upstream 100 bases:

>100_bases
CAAAGCGCGGAACGCAGTCGCAGTAAACCGGCTATTAAGCATAACCCGTAAAAATCGACACATATGTTAGGTTTCCGAGT
CTTGGCGCAGGAGTGCGATC

Downstream 100 bases:

>100_bases
TCGCGCCCGCAGCAAAAGCATCAACTTCGCCCTGCTCAAACACACGCGCCTGACTTAGAACACGCACGAACCGTCATGAG
ATCTGCACAAAACGCGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSMREDGPSINQRQLSAVDGYKNFSNSMASRQLARAMAELRESAAGANYPREVAPSDKPAPSPLPAGDRDIAQQAFLAHC
TQHQMSGREASRLYAGAKAFI

Sequences:

>Translated_101_residues
MSMREDGPSINQRQLSAVDGYKNFSNSMASRQLARAMAELRESAAGANYPREVAPSDKPAPSPLPAGDRDIAQQAFLAHC
TQHQMSGREASRLYAGAKAFI
>Mature_100_residues
SMREDGPSINQRQLSAVDGYKNFSNSMASRQLARAMAELRESAAGANYPREVAPSDKPAPSPLPAGDRDIAQQAFLAHCT
QHQMSGREASRLYAGAKAFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10924; Mature: 10793

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMREDGPSINQRQLSAVDGYKNFSNSMASRQLARAMAELRESAAGANYPREVAPSDKPA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PSPLPAGDRDIAQQAFLAHCTQHQMSGREASRLYAGAKAFI
CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SMREDGPSINQRQLSAVDGYKNFSNSMASRQLARAMAELRESAAGANYPREVAPSDKPA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PSPLPAGDRDIAQQAFLAHCTQHQMSGREASRLYAGAKAFI
CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA