| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082220
Identifier: 99082220
GI number: 99082220
Start: 2500799
End: 2501512
Strand: Direct
Name: 99082220
Synonym: TM1040_2380
Alternate gene names: NA
Gene position: 2500799-2501512 (Clockwise)
Preceding gene: 99082219
Following gene: 99082221
Centisome position: 78.13
GC content: 60.92
Gene sequence:
>714_bases ATGAGCAGCTCAAACGCGGGGCTGGATGACAGCCTGCGCAAGAAAATCATAGAGAAACCCGGCGTGGTGCTGGACGACCC CAACGTGATGCGGGCGTTGGTGGCTGCGAATGAACGCGCGATGGGCTCCAATATCGTGGACCTGCGTGGCATCGCCATGG AGCGGCTGGAAACGCGGCTTGACCGGCTGGAAGACACCCATCGCTCGGTGATTGCGGCGGCCTATGAAAACCTTGCCGGC ACCAATCAGATTCACCGCGCGGTGCTGCGGCTTCTGGACCCTGAGAGCTTTGCGGAGTTCATGGAAGTCCTGCGGGGCGA TCTCAGGGACATCCTGCGTGTCGACGCCCTCGCCCTCATCCTTGAGACCACCCAAGAGGAGGCCGGAGCGGCGGTAGAGC GTGTTGGCGACATTCTGAAATTTACCGAATCTGGCTTCGTGCAATCTTATCTTGCGCAAGAGCGCGCCTATGGTGGCGAC CGCTGTGTAACCTTGCGGCAGATCCAGGCTGGTCCGGCGCGACTCTACGGTGAGCGAGGCGCTGACCTTCGGTCAGAGGC CTGCCTGCGCCTCGACCTTGGTGCAGGACGCCTGCCCGGACTGCTTGTCTTTGGCGCCGAGGATCCCCATCAATTCACAC CGCAACACGGCACCGACCTTTTGACATTTTTTGGTGGTGTATTCGAGCGCTGCATGCGCCGTTGGCTGTCTTGA
Upstream 100 bases:
>100_bases AAAGAATTGCCCACTTGAGCCGTTTTTGCGATTTTTCGCGCGCGCGCTGAGACGCCCCATGTTATAGTCGCGAAAACCCG GCAGAGGTTGAGGCAAGACG
Downstream 100 bases:
>100_bases GCGCGGGCGACCCGACGCTGATCTCTCCGGCGGCGCGCGATGCGTTGCAGCGCTGGCTGGACGGTCTCGGTGCGCTTGAA GGCGCGGCGGACAATACGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSVIAAAYENLAG TNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGD RCVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS
Sequences:
>Translated_237_residues MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSVIAAAYENLAG TNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGD RCVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS >Mature_236_residues SSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSVIAAAYENLAGT NQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGDR CVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS
Specific function: Unknown
COG id: COG3159
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26227; Mature: 26096
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRL CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH DRLEDTHRSVIAAAYENLAGTNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALI HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH LETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGDRCVTLRQIQAGPARLYGERG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHCCCC ADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS CCHHHHHHEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRL CCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH DRLEDTHRSVIAAAYENLAGTNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALI HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH LETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGDRCVTLRQIQAGPARLYGERG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHCCCC ADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS CCHHHHHHEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA