Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082220

Identifier: 99082220

GI number: 99082220

Start: 2500799

End: 2501512

Strand: Direct

Name: 99082220

Synonym: TM1040_2380

Alternate gene names: NA

Gene position: 2500799-2501512 (Clockwise)

Preceding gene: 99082219

Following gene: 99082221

Centisome position: 78.13

GC content: 60.92

Gene sequence:

>714_bases
ATGAGCAGCTCAAACGCGGGGCTGGATGACAGCCTGCGCAAGAAAATCATAGAGAAACCCGGCGTGGTGCTGGACGACCC
CAACGTGATGCGGGCGTTGGTGGCTGCGAATGAACGCGCGATGGGCTCCAATATCGTGGACCTGCGTGGCATCGCCATGG
AGCGGCTGGAAACGCGGCTTGACCGGCTGGAAGACACCCATCGCTCGGTGATTGCGGCGGCCTATGAAAACCTTGCCGGC
ACCAATCAGATTCACCGCGCGGTGCTGCGGCTTCTGGACCCTGAGAGCTTTGCGGAGTTCATGGAAGTCCTGCGGGGCGA
TCTCAGGGACATCCTGCGTGTCGACGCCCTCGCCCTCATCCTTGAGACCACCCAAGAGGAGGCCGGAGCGGCGGTAGAGC
GTGTTGGCGACATTCTGAAATTTACCGAATCTGGCTTCGTGCAATCTTATCTTGCGCAAGAGCGCGCCTATGGTGGCGAC
CGCTGTGTAACCTTGCGGCAGATCCAGGCTGGTCCGGCGCGACTCTACGGTGAGCGAGGCGCTGACCTTCGGTCAGAGGC
CTGCCTGCGCCTCGACCTTGGTGCAGGACGCCTGCCCGGACTGCTTGTCTTTGGCGCCGAGGATCCCCATCAATTCACAC
CGCAACACGGCACCGACCTTTTGACATTTTTTGGTGGTGTATTCGAGCGCTGCATGCGCCGTTGGCTGTCTTGA

Upstream 100 bases:

>100_bases
AAAGAATTGCCCACTTGAGCCGTTTTTGCGATTTTTCGCGCGCGCGCTGAGACGCCCCATGTTATAGTCGCGAAAACCCG
GCAGAGGTTGAGGCAAGACG

Downstream 100 bases:

>100_bases
GCGCGGGCGACCCGACGCTGATCTCTCCGGCGGCGCGCGATGCGTTGCAGCGCTGGCTGGACGGTCTCGGTGCGCTTGAA
GGCGCGGCGGACAATACGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSVIAAAYENLAG
TNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGD
RCVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS

Sequences:

>Translated_237_residues
MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSVIAAAYENLAG
TNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGD
RCVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS
>Mature_236_residues
SSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRLDRLEDTHRSVIAAAYENLAGT
NQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALILETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGDR
CVTLRQIQAGPARLYGERGADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS

Specific function: Unknown

COG id: COG3159

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26227; Mature: 26096

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRL
CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DRLEDTHRSVIAAAYENLAGTNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGDRCVTLRQIQAGPARLYGERG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHCCCC
ADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS
CCHHHHHHEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSSNAGLDDSLRKKIIEKPGVVLDDPNVMRALVAANERAMGSNIVDLRGIAMERLETRL
CCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DRLEDTHRSVIAAAYENLAGTNQIHRAVLRLLDPESFAEFMEVLRGDLRDILRVDALALI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LETTQEEAGAAVERVGDILKFTESGFVQSYLAQERAYGGDRCVTLRQIQAGPARLYGERG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHCCCC
ADLRSEACLRLDLGAGRLPGLLVFGAEDPHQFTPQHGTDLLTFFGGVFERCMRRWLS
CCHHHHHHEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA