Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082217

Identifier: 99082217

GI number: 99082217

Start: 2496237

End: 2497472

Strand: Reverse

Name: 99082217

Synonym: TM1040_2377

Alternate gene names: NA

Gene position: 2497472-2496237 (Counterclockwise)

Preceding gene: 99082218

Following gene: 99082216

Centisome position: 78.02

GC content: 58.66

Gene sequence:

>1236_bases
ATGTTTACGCCCATCTCTCTTGCGCAGGGCCGCACGCTGCCGTTCTGGCGCCGCCCCATCACGCTTTTGTTCCTCATGGC
GATCGCCATGCCCGTCGCATTTAATACGTGGTCGGCACTGCTCAATAACTTTGTGATTGAGGTGGCTAATTTCGACGGCG
CGGATATTGGCGTCCTGCACACGATGCGCGAGATTCCGGGGTTTTTGGCGTTTCTTGTGATCTTTCTGATCATCTTTATC
CGCGAGCAGGTTCTGGGGCTTTTGTCTCTGGCGCTCTTGGGAGCGGCCACGGCAGTCACAGCGTGGTTCCCCACGCTTCA
GGGGATCCTGATGATTACGGTCCTCAGTTCCATCGGCTTTCACTATTACGAGACGGTGGCGCAATCGCTGCAGTTGCAGT
GGCTCTCTAAGGAGCGCGCGCCGCAGATGCTGGGCTGGCTTGTGGCCACGGGATCGGCAGCGACGCTTGTGGTCTATGGT
GCCATCGTGGTCCTCTGGGAGCCAATGAACCTCTCTTATAATGTGGTCTACCTGGCTGCAGGCGGCTTTACGGTCCTGAT
TGCACTCTATTGCCTCTTTGCGGTGCCTCAGTTTGACGGCCCGACGCCGCAAAACAAGAAGATGGTGCTGCGGCGGCGCT
ACTGGCTCTATTATGCGCTGCAGTTCATGGCTGGGGCGCGGCGTCAGATCTTCGTGGTCTTTGCGGGCTTCATGATGGTA
GAGCGCTTTGGCTTTGAGGTGCATCACCTGACCGGGCTCTATCTCATCAACCTCTTGGTCAACATGGTGGCGGCGCCATT
TCTCGGGCGCTTTGTCGCCCGGTTTGGCGAGCGGCGCACGTTGATCTTTGAATACGCAGGTCTGGCCACTGTCTTTGCCC
TTTATGGCGGGATCTATTGGTTCGGCTGGGGCGTGATGCTGGCGGCAGCGCTTTATGTGGTGGATCACATCCTCTTTGCC
CTCGCCCTCGCACTCAAGACCTATTTCCAGAAGATCGCAGACCCCGCCGATATTGCCCCCACGGCCGCTGTTGCGTTTAC
GATCAACCACATCGCAGCGGTGTTCTTGCCGGTGATGCTGGGCCTTTTGTGGGTGGCCTCCCCGGCGGCGGTCTTTGGCT
TGGCAGCGATGATGGCGCTGGTGTCGCTCTTGTTGTCGCTGATGATTCCGCGCCACCCCGAGCCCGGGAATGAGACCATC
TTTGCGCAGTTCGCGGCCCCGACACCTGCGGAATAA

Upstream 100 bases:

>100_bases
TGTCACACAGTCGTAGCGCGCAGAAATGCAGAGGCGTCTGTGCGTGGCTTGGTACAATTCTTTTCTCGCCCACGCACAAA
AAGCGCACTAAAGCCAAGCC

Downstream 100 bases:

>100_bases
GGACCGCTGGAGGGCGGCGCGGCTCTGCTCACCCCTTGACCAATCACACAAGGCTCGCGTAGGCGCTGATCAACCGCGCG
CGACGCGCTCTATGTTTCGT

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Transporter MFS Superfamily; Permease Facilitator Superfamily; Permease Of Facilitator Superfamily; Facilitator Superfamily Permease; MFS Protein Permease Component; Multidrug-Efflux Transporter MFS Family; Facilitator Family Transporter

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLAFLVIFLIIFI
REQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYG
AIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV
ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFA
LALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETI
FAQFAAPTPAE

Sequences:

>Translated_411_residues
MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLAFLVIFLIIFI
REQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYG
AIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV
ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFA
LALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETI
FAQFAAPTPAE
>Mature_411_residues
MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLHTMREIPGFLAFLVIFLIIFI
REQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGFHYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYG
AIVVLWEPMNLSYNVVYLAAGGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV
ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYWFGWGVMLAAALYVVDHILFA
LALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVMLGLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETI
FAQFAAPTPAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45470; Mature: 45470

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTPISLAQGRTLPFWRRPITLLFLMAIAMPVAFNTWSALLNNFVIEVANFDGADIGVLH
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHH
TMREIPGFLAFLVIFLIIFIREQVLGLLSLALLGAATAVTAWFPTLQGILMITVLSSIGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYYETVAQSLQLQWLSKERAPQMLGWLVATGSAATLVVYGAIVVLWEPMNLSYNVVYLAA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHEEECCCCCEEEEEEEC
GGFTVLIALYCLFAVPQFDGPTPQNKKMVLRRRYWLYYALQFMAGARRQIFVVFAGFMMV
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ERFGFEVHHLTGLYLINLLVNMVAAPFLGRFVARFGERRTLIFEYAGLATVFALYGGIYW
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
FGWGVMLAAALYVVDHILFALALALKTYFQKIADPADIAPTAAVAFTINHIAAVFLPVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GLLWVASPAAVFGLAAMMALVSLLLSLMIPRHPEPGNETIFAQFAAPTPAE
HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure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HHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA