Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99082214

Identifier: 99082214

GI number: 99082214

Start: 2494425

End: 2494643

Strand: Direct

Name: 99082214

Synonym: TM1040_2374

Alternate gene names: NA

Gene position: 2494425-2494643 (Clockwise)

Preceding gene: 99082195

Following gene: 99082219

Centisome position: 77.93

GC content: 61.64

Gene sequence:

>219_bases
ATGGCTGCAATCGACACCACCCGCACCGCGCAAGGCACCTCCGGCCTGATCGGCCGTATCGGCGCTTTTTTGTACACCAC
ATCTGCCAAGCTGATGGCATGGAATGATGCCCGCGTGACGCGCAAGTCGCTCAGCGCGCTGTCAGACCGCGAGCTTGCCG
ATATCGGCCTGTGCCGCGGCGACATTGATCAAATCGACGCGCATTCGCCGCTCGTCTAA

Upstream 100 bases:

>100_bases
ACATGCAATTTCACCCCTTGCGAGGGCCGGTTTCGACCTCTATCTGCCGCTCACTCGCTATCGGGCGAGAAATCGGATCA
TACTGAGAAAGACCCTGGAT

Downstream 100 bases:

>100_bases
GCGCGGGTCTGAATGCGGATCTGGACGTCAACCTGACGCGTCCCTGCATCACACACCCCAAAACGCAAACGCCGCGCCCG
GCCAATCCGGGACGCGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MAAIDTTRTAQGTSGLIGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRGDIDQIDAHSPLV

Sequences:

>Translated_72_residues
MAAIDTTRTAQGTSGLIGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRGDIDQIDAHSPLV
>Mature_71_residues
AAIDTTRTAQGTSGLIGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRGDIDQIDAHSPLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7679; Mature: 7548

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIDTTRTAQGTSGLIGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRG
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHCCCC
DIDQIDAHSPLV
CCCCCCCCCCCC
>Mature Secondary Structure 
AAIDTTRTAQGTSGLIGRIGAFLYTTSAKLMAWNDARVTRKSLSALSDRELADIGLCRG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHCCCC
DIDQIDAHSPLV
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA