Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99082195

Identifier: 99082195

GI number: 99082195

Start: 2475902

End: 2477209

Strand: Direct

Name: 99082195

Synonym: TM1040_2355

Alternate gene names: NA

Gene position: 2475902-2477209 (Clockwise)

Preceding gene: 99082194

Following gene: 99082214

Centisome position: 77.35

GC content: 59.4

Gene sequence:

>1308_bases
ATGAACATGCAGAACCAGACGGTCATGGCTCCCCCGCCCCCCAAGGGGCTGGCAGAAATGCGTCTGCCACTGGTGATGAT
GCGGGACATCCTGCTGAAGACGATGTTTCGAAAGAACCTCGACATGGTGACCGATCTGGCCGGCGCGATCTGCCTGCCGA
CGTCTGTCACCCAAGAGCTTGTCGACCTCGCGCGTGGCCAGAAGCTCCTTGAGGCCACAGGGACCCTCAATGCCAATTCC
GGCAATGAGATGGGCTATCAGCTGACCGACGCGGGCAAGGCCCGCGCGCTCGATGCGCTGTCGCAGTCGGAATATTTTGG
CGCAATGCCGGTGCCGCTTGACGTGTACCGCGAACAGGTAAAGCGCCAGTCGATCCGCAATATCATGGTGACGCGCCAGC
AGCTTACTTCGGCCATGGGCCACCTGATCCTGCCCGACAGCCTCCTGGACCACCTCGGCCCCGCCGTAAGCGCAGGCCGG
TCGATCCTGATGTATGGTCCACCCGGCAACGGGAAATCCTCTATTTCCAATGGCATCCGGGACGCGCTTGGTGACCGGGT
CTATGTGCCCCGCGCGATTGAATACGCCGGCCAGGTCATCACGGTGTACGATCCGATCGTCCACACCGAGGTCGCAGCAG
AGCCCGTGGACCCCAATGCCCTGCGCAAGCGGCGCCGTTTTGACGAACGCTATGTCTGCTGCGAGCGCCCCACAGTGGTC
ACAGGCGGCGAGCTATCGTTGTCGATGCTGGATCTCGTCTACAACCCCACCGCGCGCACCTATCAGGCCCCGTTGCAACT
CAAGTCGACCGGCGGCATTTTCATCGTCGACGACCTTGGACGCCAGGCCGAGAGCCCGCAGGCCCTGGTCAACCGCTGGA
TCGTCCCTCTGGAGGAAAGCAAAGATATCCTCGCGCTGCAATCGGGTGAAAAATTCGAAGTCCCCTTTGACACGCTGGTG
ATCTTCTCCACCAACTTCCACCCCAATGAGATCTTCGATCAGGCGGCCCTGCGCCGCATCTTCTTCAAGATCAAAATCGA
CGGGCCGGATCAGGAAAACTTCCTCAAGATCTTTGCCATGGTGGCGCGCAAGAAAGGCATGCCCCTCGATGAGGCCGCGC
TGGTGCATCTTCTGAAGACGAAATACCCCACCATCGACAATGTCTACGCAAACTATCAGCCGGTGTTCCTGATCGACCAG
ATGATCTCCATCTGCGAGTTCGAAGGCATCCCCTATCAGATGTCGCCAGAACTGATCGACCGCGCTTGGGCAAACATGTT
TGTCAGAGACGAAGTCATCGTCAAATAG

Upstream 100 bases:

>100_bases
GCAGGGCTGCCGTGGTCTTGCCACAGTGTTGAATAGTCTCTTTCCAAGATCAAACGTGACGGCATCGCCGTCCCAACCCG
CGTGAAAAGAGGCTCGCCTG

Downstream 100 bases:

>100_bases
TCCCGGCTCAAACGCCCTGCAAAACCAAAAGGCGCCGGAGGCAACAGCCCCGACGCCTTTTTCATCTTTTCAAAAATATC
TCCGCCGGAGGCAGCGGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: ATPase; ATPase With Chaperone Activity; AAA+ Class ATPase With Chaperone Activity; ATPase Central Domain-Containing Protein; Aaa ATPase; ATPase Protein With Chaperone Activity; Chaperone ATPase; AAA Family ATPase; AAA ATPase Central Domain Protein; ATPase Chaperone Activity; ATPase With Chaperone Activity-Like Protein; AAA+ Class ATPase

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MNMQNQTVMAPPPPKGLAEMRLPLVMMRDILLKTMFRKNLDMVTDLAGAICLPTSVTQELVDLARGQKLLEATGTLNANS
GNEMGYQLTDAGKARALDALSQSEYFGAMPVPLDVYREQVKRQSIRNIMVTRQQLTSAMGHLILPDSLLDHLGPAVSAGR
SILMYGPPGNGKSSISNGIRDALGDRVYVPRAIEYAGQVITVYDPIVHTEVAAEPVDPNALRKRRRFDERYVCCERPTVV
TGGELSLSMLDLVYNPTARTYQAPLQLKSTGGIFIVDDLGRQAESPQALVNRWIVPLEESKDILALQSGEKFEVPFDTLV
IFSTNFHPNEIFDQAALRRIFFKIKIDGPDQENFLKIFAMVARKKGMPLDEAALVHLLKTKYPTIDNVYANYQPVFLIDQ
MISICEFEGIPYQMSPELIDRAWANMFVRDEVIVK

Sequences:

>Translated_435_residues
MNMQNQTVMAPPPPKGLAEMRLPLVMMRDILLKTMFRKNLDMVTDLAGAICLPTSVTQELVDLARGQKLLEATGTLNANS
GNEMGYQLTDAGKARALDALSQSEYFGAMPVPLDVYREQVKRQSIRNIMVTRQQLTSAMGHLILPDSLLDHLGPAVSAGR
SILMYGPPGNGKSSISNGIRDALGDRVYVPRAIEYAGQVITVYDPIVHTEVAAEPVDPNALRKRRRFDERYVCCERPTVV
TGGELSLSMLDLVYNPTARTYQAPLQLKSTGGIFIVDDLGRQAESPQALVNRWIVPLEESKDILALQSGEKFEVPFDTLV
IFSTNFHPNEIFDQAALRRIFFKIKIDGPDQENFLKIFAMVARKKGMPLDEAALVHLLKTKYPTIDNVYANYQPVFLIDQ
MISICEFEGIPYQMSPELIDRAWANMFVRDEVIVK
>Mature_435_residues
MNMQNQTVMAPPPPKGLAEMRLPLVMMRDILLKTMFRKNLDMVTDLAGAICLPTSVTQELVDLARGQKLLEATGTLNANS
GNEMGYQLTDAGKARALDALSQSEYFGAMPVPLDVYREQVKRQSIRNIMVTRQQLTSAMGHLILPDSLLDHLGPAVSAGR
SILMYGPPGNGKSSISNGIRDALGDRVYVPRAIEYAGQVITVYDPIVHTEVAAEPVDPNALRKRRRFDERYVCCERPTVV
TGGELSLSMLDLVYNPTARTYQAPLQLKSTGGIFIVDDLGRQAESPQALVNRWIVPLEESKDILALQSGEKFEVPFDTLV
IFSTNFHPNEIFDQAALRRIFFKIKIDGPDQENFLKIFAMVARKKGMPLDEAALVHLLKTKYPTIDNVYANYQPVFLIDQ
MISICEFEGIPYQMSPELIDRAWANMFVRDEVIVK

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48609; Mature: 48609

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMQNQTVMAPPPPKGLAEMRLPLVMMRDILLKTMFRKNLDMVTDLAGAICLPTSVTQEL
CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHH
VDLARGQKLLEATGTLNANSGNEMGYQLTDAGKARALDALSQSEYFGAMPVPLDVYREQV
HHHHHCHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KRQSIRNIMVTRQQLTSAMGHLILPDSLLDHLGPAVSAGRSILMYGPPGNGKSSISNGIR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCEEEEECCCCCCHHHHHHHHH
DALGDRVYVPRAIEYAGQVITVYDPIVHTEVAAEPVDPNALRKRRRFDERYVCCERPTVV
HHHCCCEECCHHHHHCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCCHHHEEEECCCEEE
TGGELSLSMLDLVYNPTARTYQAPLQLKSTGGIFIVDDLGRQAESPQALVNRWIVPLEES
ECCCCHHHHHHHHCCCCCCCEECCEEEECCCCEEEEECCCCCCCCCHHHHHHCCCCCCCC
KDILALQSGEKFEVPFDTLVIFSTNFHPNEIFDQAALRRIFFKIKIDGPDQENFLKIFAM
CCEEEECCCCEECCCCEEEEEEECCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHH
VARKKGMPLDEAALVHLLKTKYPTIDNVYANYQPVFLIDQMISICEFEGIPYQMSPELID
HHHHCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
RAWANMFVRDEVIVK
HHHHHHHHCCCEECC
>Mature Secondary Structure
MNMQNQTVMAPPPPKGLAEMRLPLVMMRDILLKTMFRKNLDMVTDLAGAICLPTSVTQEL
CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHH
VDLARGQKLLEATGTLNANSGNEMGYQLTDAGKARALDALSQSEYFGAMPVPLDVYREQV
HHHHHCHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KRQSIRNIMVTRQQLTSAMGHLILPDSLLDHLGPAVSAGRSILMYGPPGNGKSSISNGIR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCEEEEECCCCCCHHHHHHHHH
DALGDRVYVPRAIEYAGQVITVYDPIVHTEVAAEPVDPNALRKRRRFDERYVCCERPTVV
HHHCCCEECCHHHHHCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCCHHHEEEECCCEEE
TGGELSLSMLDLVYNPTARTYQAPLQLKSTGGIFIVDDLGRQAESPQALVNRWIVPLEES
ECCCCHHHHHHHHCCCCCCCEECCEEEECCCCEEEEECCCCCCCCCHHHHHHCCCCCCCC
KDILALQSGEKFEVPFDTLVIFSTNFHPNEIFDQAALRRIFFKIKIDGPDQENFLKIFAM
CCEEEECCCCEECCCCEEEEEEECCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHH
VARKKGMPLDEAALVHLLKTKYPTIDNVYANYQPVFLIDQMISICEFEGIPYQMSPELID
HHHHCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
RAWANMFVRDEVIVK
HHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA