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The map label for this gene is yomI [H]

Identifier: 99082182

GI number: 99082182

Start: 2463866

End: 2464684

Strand: Reverse

Name: yomI [H]

Synonym: TM1040_2342

Alternate gene names: 99082182

Gene position: 2464684-2463866 (Counterclockwise)

Preceding gene: 99082196

Following gene: 99082176

Centisome position: 77.0

GC content: 61.17

Gene sequence:

>819_bases
ATGAGTGTGAAACGGGGACTCGCGATATGCTGTGGCCTGGTGTTTGCAGCACTTGCGCAGGCGCAAGAGGCGCCCGCGCC
GTTTGCCGACTTTGAGGCCAAACGTGTGCGCCCGCCCGCACCAGGCACCCAAAAGCGCATCACGGTTCAGATAGAACCCA
AAGCCCCTAAGGTTGGTGAAGAGAGTGCAAGCCCTCAGGGTGAGAGCGATGTGGGCTCTGTCCCAACCGCACCTCAGGCG
CGGTATGCGTGGTTCTGGGATGAGGTCGGGGCGGATCTCGCTGGGGCGTCTCCCGGACGGTTGCAGAGTAGTCTCGCGGT
GCTTGAGGCGCGCAATGACATTGCCACGCCGCGACTGCAGGAGTTGCAGAGCATGATCTCCAACTATGGGGTGTCGCTGT
TGACCTCGACAATCGGCACCGAAGTGTCCCCGGCCTTGGTGCTTGCGGTGATGGCGGTCGAATCCGGTGGCAAGCCTGAT
GCGGTGAGTCGCGTGGGGGCAGAGGGGCTGATGCAGCTCATGCCGGATACGGCGACCCAGTTCGGCGTTGATGATTCCTT
TGACCCAAAACAGAACATCGCAGGCGGCGTTCGGTTCCTGGATCAGTTGATGCGGGATTTTTCGGGAGATCCGGTTCTGG
TCCTGGCGGGCTACAATGCCGGGGCAGGGGCGGTGCGTGAGCATGGCGGGGTGCCACCCTATGCAGAGACGCGGGATTAT
GTCCCAAAGGTTCTTGCGGCGTACCGGCTGGCGCGAAATCTCTGCACGACGCCTCCGATCATGATTTCCGATGGCTGCGT
GTTTCAAACGATGAAATGA

Upstream 100 bases:

>100_bases
TGCAAATGTGGCGAAATGGGCCAAATCTGTCCGGCTGAACTGGATTTTCGGGCCTCGATGGCAGAGTGTGCTAGCACAAA
GCAGACGATGAGCAGGCGAA

Downstream 100 bases:

>100_bases
GACGAGCGCTCCGCTTCGCCCCTGGAGCGGTGTTCTCGATTATACCGAAGCTGGAAAATGAGCTGAGCGGATCAGTCTAC
GGGGTCTGGGCAATCTGGTG

Product: lytic transglycosylase, catalytic

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSVKRGLAICCGLVFAALAQAQEAPAPFADFEAKRVRPPAPGTQKRITVQIEPKAPKVGEESASPQGESDVGSVPTAPQA
RYAWFWDEVGADLAGASPGRLQSSLAVLEARNDIATPRLQELQSMISNYGVSLLTSTIGTEVSPALVLAVMAVESGGKPD
AVSRVGAEGLMQLMPDTATQFGVDDSFDPKQNIAGGVRFLDQLMRDFSGDPVLVLAGYNAGAGAVREHGGVPPYAETRDY
VPKVLAAYRLARNLCTTPPIMISDGCVFQTMK

Sequences:

>Translated_272_residues
MSVKRGLAICCGLVFAALAQAQEAPAPFADFEAKRVRPPAPGTQKRITVQIEPKAPKVGEESASPQGESDVGSVPTAPQA
RYAWFWDEVGADLAGASPGRLQSSLAVLEARNDIATPRLQELQSMISNYGVSLLTSTIGTEVSPALVLAVMAVESGGKPD
AVSRVGAEGLMQLMPDTATQFGVDDSFDPKQNIAGGVRFLDQLMRDFSGDPVLVLAGYNAGAGAVREHGGVPPYAETRDY
VPKVLAAYRLARNLCTTPPIMISDGCVFQTMK
>Mature_271_residues
SVKRGLAICCGLVFAALAQAQEAPAPFADFEAKRVRPPAPGTQKRITVQIEPKAPKVGEESASPQGESDVGSVPTAPQAR
YAWFWDEVGADLAGASPGRLQSSLAVLEARNDIATPRLQELQSMISNYGVSLLTSTIGTEVSPALVLAVMAVESGGKPDA
VSRVGAEGLMQLMPDTATQFGVDDSFDPKQNIAGGVRFLDQLMRDFSGDPVLVLAGYNAGAGAVREHGGVPPYAETRDYV
PKVLAAYRLARNLCTTPPIMISDGCVFQTMK

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=150, Percent_Identity=32.6666666666667, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 28678; Mature: 28547

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKRGLAICCGLVFAALAQAQEAPAPFADFEAKRVRPPAPGTQKRITVQIEPKAPKVGE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCC
ESASPQGESDVGSVPTAPQARYAWFWDEVGADLAGASPGRLQSSLAVLEARNDIATPRLQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
ELQSMISNYGVSLLTSTIGTEVSPALVLAVMAVESGGKPDAVSRVGAEGLMQLMPDTATQ
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
FGVDDSFDPKQNIAGGVRFLDQLMRDFSGDPVLVLAGYNAGAGAVREHGGVPPYAETRDY
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCCHHHH
VPKVLAAYRLARNLCTTPPIMISDGCVFQTMK
HHHHHHHHHHHHHHCCCCCEEEECCCEEECCC
>Mature Secondary Structure 
SVKRGLAICCGLVFAALAQAQEAPAPFADFEAKRVRPPAPGTQKRITVQIEPKAPKVGE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCC
ESASPQGESDVGSVPTAPQARYAWFWDEVGADLAGASPGRLQSSLAVLEARNDIATPRLQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
ELQSMISNYGVSLLTSTIGTEVSPALVLAVMAVESGGKPDAVSRVGAEGLMQLMPDTATQ
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
FGVDDSFDPKQNIAGGVRFLDQLMRDFSGDPVLVLAGYNAGAGAVREHGGVPPYAETRDY
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCCHHHH
VPKVLAAYRLARNLCTTPPIMISDGCVFQTMK
HHHHHHHHHHHHHHCCCCCEEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]