Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is yoaV [H]

Identifier: 99082144

GI number: 99082144

Start: 2422378

End: 2423277

Strand: Direct

Name: yoaV [H]

Synonym: TM1040_2304

Alternate gene names: 99082144

Gene position: 2422378-2423277 (Clockwise)

Preceding gene: 99082143

Following gene: 99082153

Centisome position: 75.68

GC content: 64.22

Gene sequence:

>900_bases
ATGCCGGAAATCGCACCCCGTTACTGGGCCATGGTGGCCGCCTTGGGTCTCACCTGGGGCGGCACCTTCATGGTGGTGGA
ATTGGCGCTGCGCGGCATCACACCCTTCTGGCTCGCGGCAGGGCGGATCGGCTTTGCCGCGCTCCTGCTTACTTCGATCT
GGGGTCTGCGCGGCTTTCGCCTGTTTGAGACCCGCGCGAACTGGCCCGTGGTGATCTTCGTGGGCCTGCTCAGCTCCACC
CTGCCCTTCATCCTGATCAGCTGGGGTCTGCAACATGTGACTTCGGGCTTTGCAGGCGTCAGCATGGCGGCCATCCCGCT
GATGGTGCTGCCACTTGCGCATTTCTTTGCCGCCGAGCCGCTGACCCCGCGCCGACTGCTCGGTGTGATCATCGGCTTTC
TGGGGGTCGCTTTGCTGATTGGCGGTCAGGCCTTCGAGAGCAATGGCTCCGATCTGGAATGGGCCGGGCGGCTGGCCTGC
CTCACCGCCGCTGCCTGCTACTCGGTTTCTTCGATCTCGGTGCGCCGCCTTCCGGCGGTCGACTCGGTGGGGCTTGCGGC
GGTCCTTTTGCTGATCGGCGCTCTGGGCATTCTGCCTGCGGCCTGGCTGGTTGAAGGTCCCCCGCCCGCCATCTCCTCAG
AGACATGGATGTGGCTTGCTATCCTCGGCCTGATTCCGACCGCAGGCGCAAACCTCCTGCGCGTGCTGGTCATTCGCGGC
GCAGGCCCCACCTTCATGAGCCTCACCAACTATCTGGTGCCGGTCTGTGCGGTGCTTTTTGGGGCACTCTTCCTGAAAGA
AGCCCTCCCCAGCGTTCTCTTGTGGTCTCTGGCACTCATTCTCGCAGGCGTCGCGCTGAGCCAATACGGCGCCCTGAAGC
GTCTCTTTGGCCTGAGCTGA

Upstream 100 bases:

>100_bases
CTCGGGAAACCGGGGCGCCTTCTCCACGTCACAGGGCTGCCGCGCGCCGCCGCCCCAGACGGTTCTGACCTGCTGACAGC
AACACTCCAAGGAGACCACA

Downstream 100 bases:

>100_bases
CACCTCTTTATTTTCTCGACAAGATCTCGGGGTGACGACTCTGCCTGTGGAGACAGAGCCCCCCATGAAGGGACCAAAGC
AAACCCTGCGCCGCCGACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MPEIAPRYWAMVAALGLTWGGTFMVVELALRGITPFWLAAGRIGFAALLLTSIWGLRGFRLFETRANWPVVIFVGLLSST
LPFILISWGLQHVTSGFAGVSMAAIPLMVLPLAHFFAAEPLTPRRLLGVIIGFLGVALLIGGQAFESNGSDLEWAGRLAC
LTAAACYSVSSISVRRLPAVDSVGLAAVLLLIGALGILPAAWLVEGPPPAISSETWMWLAILGLIPTAGANLLRVLVIRG
AGPTFMSLTNYLVPVCAVLFGALFLKEALPSVLLWSLALILAGVALSQYGALKRLFGLS

Sequences:

>Translated_299_residues
MPEIAPRYWAMVAALGLTWGGTFMVVELALRGITPFWLAAGRIGFAALLLTSIWGLRGFRLFETRANWPVVIFVGLLSST
LPFILISWGLQHVTSGFAGVSMAAIPLMVLPLAHFFAAEPLTPRRLLGVIIGFLGVALLIGGQAFESNGSDLEWAGRLAC
LTAAACYSVSSISVRRLPAVDSVGLAAVLLLIGALGILPAAWLVEGPPPAISSETWMWLAILGLIPTAGANLLRVLVIRG
AGPTFMSLTNYLVPVCAVLFGALFLKEALPSVLLWSLALILAGVALSQYGALKRLFGLS
>Mature_298_residues
PEIAPRYWAMVAALGLTWGGTFMVVELALRGITPFWLAAGRIGFAALLLTSIWGLRGFRLFETRANWPVVIFVGLLSSTL
PFILISWGLQHVTSGFAGVSMAAIPLMVLPLAHFFAAEPLTPRRLLGVIIGFLGVALLIGGQAFESNGSDLEWAGRLACL
TAAACYSVSSISVRRLPAVDSVGLAAVLLLIGALGILPAAWLVEGPPPAISSETWMWLAILGLIPTAGANLLRVLVIRGA
GPTFMSLTNYLVPVCAVLFGALFLKEALPSVLLWSLALILAGVALSQYGALKRLFGLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31605; Mature: 31474

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEIAPRYWAMVAALGLTWGGTFMVVELALRGITPFWLAAGRIGFAALLLTSIWGLRGFR
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
LFETRANWPVVIFVGLLSSTLPFILISWGLQHVTSGFAGVSMAAIPLMVLPLAHFFAAEP
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
LTPRRLLGVIIGFLGVALLIGGQAFESNGSDLEWAGRLACLTAAACYSVSSISVRRLPAV
CCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
DSVGLAAVLLLIGALGILPAAWLVEGPPPAISSETWMWLAILGLIPTAGANLLRVLVIRG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
AGPTFMSLTNYLVPVCAVLFGALFLKEALPSVLLWSLALILAGVALSQYGALKRLFGLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PEIAPRYWAMVAALGLTWGGTFMVVELALRGITPFWLAAGRIGFAALLLTSIWGLRGFR
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
LFETRANWPVVIFVGLLSSTLPFILISWGLQHVTSGFAGVSMAAIPLMVLPLAHFFAAEP
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
LTPRRLLGVIIGFLGVALLIGGQAFESNGSDLEWAGRLACLTAAACYSVSSISVRRLPAV
CCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
DSVGLAAVLLLIGALGILPAAWLVEGPPPAISSETWMWLAILGLIPTAGANLLRVLVIRG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
AGPTFMSLTNYLVPVCAVLFGALFLKEALPSVLLWSLALILAGVALSQYGALKRLFGLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]