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The map label for this gene is ycfF [C]

Identifier: 99082130

GI number: 99082130

Start: 2408933

End: 2409352

Strand: Reverse

Name: ycfF [C]

Synonym: TM1040_2290

Alternate gene names: 99082130

Gene position: 2409352-2408933 (Counterclockwise)

Preceding gene: 99082133

Following gene: 99082129

Centisome position: 75.27

GC content: 62.14

Gene sequence:

>420_bases
ATGACCGCCTATGACAACGACAATATCTTTGCCAAGATCCTGCGCGGAGAGATCCCCTCCATGCGGGTTTATGAAGATGA
CGACACGCTTGCGTTTATGGACATCATGCCGCGCGCGGACGGGCATCTCTTGGTGATCCCCAAAACCCCTTGCCGCAATG
TGCTGGATGCCAGCGCCGCGCAGCTTGAGGCGGTGATCCGCAGCGTTCAGAAACTGGCGCAGGCCAGCAAGGCGGCCTTT
GATGCGGACGGGGTGACGATCCAGCAGTTTAACGAGGCTGCCGGCGGGCAGGAGGTGTTCCACCTGCATTTCCACGTGCT
GCCGCGTCACGAGGGGGTGTCGCTGCGCGCGTCGGGGCAGATGGGCGATATGGAGGCCATTGCCGCCCACGCCGAGAAAA
TTCGCGCGGCCCTCGCGTAA

Upstream 100 bases:

>100_bases
ACCTGCGACGTGACGGGGCTGGTTGCTTGACCCCGCGCGCGTTGGCTGCGACACCCAATCCTGAGATCCGCTTTCGGTTG
ATACGGAGAGAGAACCCGCC

Downstream 100 bases:

>100_bases
TCGCATCCATCCAAGACCACAGTTATGCCGGAATCTGCGCGGGTCCGGCGCTATAACCGCTGTTTCAAAAACGGAGATTT
CAGTGACCAAACTTGCCCAT

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MTAYDNDNIFAKILRGEIPSMRVYEDDDTLAFMDIMPRADGHLLVIPKTPCRNVLDASAAQLEAVIRSVQKLAQASKAAF
DADGVTIQQFNEAAGGQEVFHLHFHVLPRHEGVSLRASGQMGDMEAIAAHAEKIRAALA

Sequences:

>Translated_139_residues
MTAYDNDNIFAKILRGEIPSMRVYEDDDTLAFMDIMPRADGHLLVIPKTPCRNVLDASAAQLEAVIRSVQKLAQASKAAF
DADGVTIQQFNEAAGGQEVFHLHFHVLPRHEGVSLRASGQMGDMEAIAAHAEKIRAALA
>Mature_138_residues
TAYDNDNIFAKILRGEIPSMRVYEDDDTLAFMDIMPRADGHLLVIPKTPCRNVLDASAAQLEAVIRSVQKLAQASKAAFD
ADGVTIQQFNEAAGGQEVFHLHFHVLPRHEGVSLRASGQMGDMEAIAAHAEKIRAALA

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=105, Percent_Identity=38.0952380952381, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787346, Length=102, Percent_Identity=41.1764705882353, Blast_Score=65, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17506713, Length=105, Percent_Identity=41.9047619047619, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320078, Length=133, Percent_Identity=32.3308270676692, Blast_Score=70, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=39.8148148148148, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=39.8148148148148, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 15142; Mature: 15011

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYDNDNIFAKILRGEIPSMRVYEDDDTLAFMDIMPRADGHLLVIPKTPCRNVLDASAA
CCCCCCCCHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHH
QLEAVIRSVQKLAQASKAAFDADGVTIQQFNEAAGGQEVFHLHFHVLPRHEGVSLRASGQ
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEEEEEEECCCCEEEEECCC
MGDMEAIAAHAEKIRAALA
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAYDNDNIFAKILRGEIPSMRVYEDDDTLAFMDIMPRADGHLLVIPKTPCRNVLDASAA
CCCCCCCHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHH
QLEAVIRSVQKLAQASKAAFDADGVTIQQFNEAAGGQEVFHLHFHVLPRHEGVSLRASGQ
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEEEEEEECCCCEEEEECCC
MGDMEAIAAHAEKIRAALA
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]