| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99082105
Identifier: 99082105
GI number: 99082105
Start: 2381126
End: 2381788
Strand: Reverse
Name: 99082105
Synonym: TM1040_2265
Alternate gene names: NA
Gene position: 2381788-2381126 (Counterclockwise)
Preceding gene: 99082107
Following gene: 99082104
Centisome position: 74.41
GC content: 65.01
Gene sequence:
>663_bases ATGCGTCTGCCCCTCGTCCTGTCGTTGGTTTACGCCCTTTCCACGCTGCCCGCGCTCGCTGGGGCGTGGCTTGAGGCGGA GGGGCGCGGTTTCACCTCAAGCGCGCTGCGGACGCGCGGCTCCGGGCAGGAAGTCAGCGGCTATATCGCCTATGGGGTCT CGCAGCGGCTGACCTTTGGACTCGATCTCAATCAAAGCACGGACGCCCAGAACCAGAGCGCGCATGCGCTCGTCTTTACG CGCCTGCCCCTGCGCCAGTCGGAGACGGGCTGGCAACTGGCCTTTGAGATGGCAGCCGGGTTTGGGCGTGTCGAGACACA ATGGAGCGGCATGAAACGGCTCGGTCTTTCGGCAGGGCGGGGGCTCAGTTGGCCCACGCGCGGAGCTTGGGTCAATTTCG ACCTGATCCGAGAGTGGCGCGAGGAAGGCCTGGCAAAGGCGTGGAAGCTCGACGGTGCTTTTGGTTTTGAGCGCAGGTCC GGACCAGCGGTGATCTTTCGCGGCGAGGTTTTTCAACCCGACGCGGGCGCGCGGATCTGGAAGGTTCTGCCCGGTTTGCG CTGGCGCCTCTCCCCCAAGCGTGAGCTGTTGACGGGGCTGGAGTGGCGCTCTTTCGGGCAGGAACGGCTTGGCCTGACGC TGGAGTTGTGGCAGAGGTTCTAG
Upstream 100 bases:
>100_bases ACGTCCTCCCTTATTCAGAGCGTAATCCAATGCGCTTGAAAGTCTACCATGCGTTGCTCTATCATAGGGAGAGTGGGTGT GATTTCAGAAGGCTTTGCCA
Downstream 100 bases:
>100_bases ACAGCAGACCTACCGCCTCGCCAGCCGGATTTCGATCCGCCCGCCCGGACACATTTACAGATCGGAAACGTGCGAGCATG CCACAAGATACCCCACCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MRLPLVLSLVYALSTLPALAGAWLEAEGRGFTSSALRTRGSGQEVSGYIAYGVSQRLTFGLDLNQSTDAQNQSAHALVFT RLPLRQSETGWQLAFEMAAGFGRVETQWSGMKRLGLSAGRGLSWPTRGAWVNFDLIREWREEGLAKAWKLDGAFGFERRS GPAVIFRGEVFQPDAGARIWKVLPGLRWRLSPKRELLTGLEWRSFGQERLGLTLELWQRF
Sequences:
>Translated_220_residues MRLPLVLSLVYALSTLPALAGAWLEAEGRGFTSSALRTRGSGQEVSGYIAYGVSQRLTFGLDLNQSTDAQNQSAHALVFT RLPLRQSETGWQLAFEMAAGFGRVETQWSGMKRLGLSAGRGLSWPTRGAWVNFDLIREWREEGLAKAWKLDGAFGFERRS GPAVIFRGEVFQPDAGARIWKVLPGLRWRLSPKRELLTGLEWRSFGQERLGLTLELWQRF >Mature_220_residues MRLPLVLSLVYALSTLPALAGAWLEAEGRGFTSSALRTRGSGQEVSGYIAYGVSQRLTFGLDLNQSTDAQNQSAHALVFT RLPLRQSETGWQLAFEMAAGFGRVETQWSGMKRLGLSAGRGLSWPTRGAWVNFDLIREWREEGLAKAWKLDGAFGFERRS GPAVIFRGEVFQPDAGARIWKVLPGLRWRLSPKRELLTGLEWRSFGQERLGLTLELWQRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24674; Mature: 24674
Theoretical pI: Translated: 11.11; Mature: 11.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPLVLSLVYALSTLPALAGAWLEAEGRGFTSSALRTRGSGQEVSGYIAYGVSQRLTFG CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCCEEEE LDLNQSTDAQNQSAHALVFTRLPLRQSETGWQLAFEMAAGFGRVETQWSGMKRLGLSAGR ECCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC GLSWPTRGAWVNFDLIREWREEGLAKAWKLDGAFGFERRSGPAVIFRGEVFQPDAGARIW CCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEECCCCCCHHH KVLPGLRWRLSPKRELLTGLEWRSFGQERLGLTLELWQRF HHCCCCEECCCCHHHHHHCCHHHHCCHHHHCEEHHHHHCC >Mature Secondary Structure MRLPLVLSLVYALSTLPALAGAWLEAEGRGFTSSALRTRGSGQEVSGYIAYGVSQRLTFG CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCCCCCEEEEECCCCCEEEE LDLNQSTDAQNQSAHALVFTRLPLRQSETGWQLAFEMAAGFGRVETQWSGMKRLGLSAGR ECCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC GLSWPTRGAWVNFDLIREWREEGLAKAWKLDGAFGFERRSGPAVIFRGEVFQPDAGARIW CCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEECCCCCCHHH KVLPGLRWRLSPKRELLTGLEWRSFGQERLGLTLELWQRF HHCCCCEECCCCHHHHHHCCHHHHCCHHHHCEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA