BacMap

Definition	Ruegeria sp. TM1040, complete genome.
Accession	NC_008044
Length	3,200,938

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The map label for this gene is ynjD [H]

Identifier: 99082093

GI number: 99082093

Start: 2368700

End: 2369335

Strand: Direct

Name: ynjD [H]

Synonym: TM1040_2253

Alternate gene names: 99082093

Gene position: 2368700-2369335 (Clockwise)

Preceding gene: 99082092

Following gene: 99082096

Centisome position: 74.0

GC content: 65.88

Gene sequence:

>636_bases
ATGGCTGAGGGCCTGAGCCTGCGTGCCCTGCGCATCCTGCGGGGCGACCATCCCCTGTTGGAACTCGACCTCACCGTGCC
CCCCGCCACCATCCTGAGCGTGATGGGGCCCTCGGGTGTTGGAAAATCCACCCTGCTTGCGGCCATCACCGGACAGATGA
GCACGGATTTCAGCCTTGAGGGCGGGATCTTCCTCAATGGCCGCGACCTCTGCCCCCTGCCCCCGCAGGCGCGCCGTGTC
GGCATCCTGTTCCAAGACCATTTGTTGTTTCCGCACCTGAGCGTTGGGGCCAACCTCGCCTTTGGCCTTGCACCCCATAT
CCGAGGCCGCACCCGTCGCGCGCGCATCAAAGACGCGCTGGCAGAAATCGGCCTAGAGGGCTTTCACGACCGCGACCCGG
AGACGCTCTCGGGCGGTCAAAAAGCCCGCGTGGCCCTGATGCGCATGCTGCTCTCCGAGCCGGATCTCTTGTTGCTGGAC
GAGCCGTTTTCCCGGCTGGACGCCACCCTGCGCAGCCAGATGCGCGATCTGGTGTACACCTTCGCCCGCGACCGCGCGCT
GCCGGTGCTGATGGTGACACATGATGCCGCAGACGCCGAGGCCGCAGGGGGGCCGATTGTTCAGTTGGAGCCATGA

Upstream 100 bases:

>100_bases
GGCCTATACGGGCTGGTGCAGACGGCTGCGGCGCTCCTGCCCTTTGTGCTGGCGCTGGCCCTGCCGCTGTTCGTCTGGCG
CAACCGAAGAGGACTTCATC

Downstream 100 bases:

>100_bases
GGGTTGGGCATACCGACCGTCCATTTTCAAATAGACTAATCGCGAGGGATACCCAAACAAGAAAAACAAGCTTTACGACG
TTCTAATTAGCAGCGTCCGT

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAEGLSLRALRILRGDHPLLELDLTVPPATILSVMGPSGVGKSTLLAAITGQMSTDFSLEGGIFLNGRDLCPLPPQARRV
GILFQDHLLFPHLSVGANLAFGLAPHIRGRTRRARIKDALAEIGLEGFHDRDPETLSGGQKARVALMRMLLSEPDLLLLD
EPFSRLDATLRSQMRDLVYTFARDRALPVLMVTHDAADAEAAGGPIVQLEP

Sequences:

>Translated_211_residues
MAEGLSLRALRILRGDHPLLELDLTVPPATILSVMGPSGVGKSTLLAAITGQMSTDFSLEGGIFLNGRDLCPLPPQARRV
GILFQDHLLFPHLSVGANLAFGLAPHIRGRTRRARIKDALAEIGLEGFHDRDPETLSGGQKARVALMRMLLSEPDLLLLD
EPFSRLDATLRSQMRDLVYTFARDRALPVLMVTHDAADAEAAGGPIVQLEP
>Mature_210_residues
AEGLSLRALRILRGDHPLLELDLTVPPATILSVMGPSGVGKSTLLAAITGQMSTDFSLEGGIFLNGRDLCPLPPQARRVG
ILFQDHLLFPHLSVGANLAFGLAPHIRGRTRRARIKDALAEIGLEGFHDRDPETLSGGQKARVALMRMLLSEPDLLLLDE
PFSRLDATLRSQMRDLVYTFARDRALPVLMVTHDAADAEAAGGPIVQLEP

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592964, Length=160, Percent_Identity=33.125, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI46592915, Length=160, Percent_Identity=33.125, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI46592898, Length=156, Percent_Identity=33.974358974359, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI46592978, Length=156, Percent_Identity=33.974358974359, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI46592956, Length=161, Percent_Identity=33.5403726708075, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI46592971, Length=156, Percent_Identity=33.974358974359, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI171184400, Length=170, Percent_Identity=35.2941176470588, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=26.4150943396226, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=26.4150943396226, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI42741659, Length=170, Percent_Identity=33.5294117647059, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI9955963, Length=164, Percent_Identity=32.9268292682927, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI157502203, Length=193, Percent_Identity=30.5699481865285, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI157502201, Length=193, Percent_Identity=30.5699481865285, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI11967971, Length=175, Percent_Identity=34.2857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI215820660, Length=159, Percent_Identity=28.9308176100629, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI20143975, Length=159, Percent_Identity=28.9308176100629, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI105990541, Length=189, Percent_Identity=25.3968253968254, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=179, Percent_Identity=30.1675977653631, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=179, Percent_Identity=30.1675977653631, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI116734710, Length=190, Percent_Identity=28.4210526315789, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI9961252, Length=179, Percent_Identity=30.1675977653631, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI11967969, Length=182, Percent_Identity=29.6703296703297, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1788053, Length=183, Percent_Identity=49.1803278688525, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI87081709, Length=190, Percent_Identity=40.5263157894737, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1787370, Length=201, Percent_Identity=38.3084577114428, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87081791, Length=193, Percent_Identity=38.860103626943, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786253, Length=184, Percent_Identity=39.1304347826087, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787712, Length=181, Percent_Identity=38.6740331491713, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI87082267, Length=199, Percent_Identity=37.6884422110553, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1790467, Length=191, Percent_Identity=38.2198952879581, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1788761, Length=195, Percent_Identity=37.9487179487179, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1786563, Length=189, Percent_Identity=40.7407407407407, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1789032, Length=190, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1787164, Length=192, Percent_Identity=39.5833333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=32.1266968325792, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=33.1683168316832, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788450, Length=186, Percent_Identity=35.4838709677419, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787029, Length=196, Percent_Identity=31.6326530612245, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786398, Length=189, Percent_Identity=34.9206349206349, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1786703, Length=191, Percent_Identity=34.5549738219895, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786981, Length=188, Percent_Identity=38.2978723404255, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1786872, Length=183, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787500, Length=177, Percent_Identity=32.2033898305085, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789962, Length=179, Percent_Identity=32.9608938547486, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789586, Length=206, Percent_Identity=31.0679611650485, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788506, Length=196, Percent_Identity=33.1632653061224, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081834, Length=187, Percent_Identity=31.0160427807487, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1789672, Length=202, Percent_Identity=31.1881188118812, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI48994943, Length=196, Percent_Identity=33.1632653061224, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=29.5698924731183, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1789873, Length=189, Percent_Identity=34.3915343915344, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=30.6603773584906, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790162, Length=209, Percent_Identity=29.6650717703349, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994883, Length=188, Percent_Identity=29.2553191489362, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1789963, Length=203, Percent_Identity=31.0344827586207, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789593, Length=188, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786803, Length=186, Percent_Identity=28.494623655914, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787105, Length=189, Percent_Identity=31.7460317460317, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790544, Length=166, Percent_Identity=33.7349397590361, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=177, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=31, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=181, Percent_Identity=29.2817679558011, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994997, Length=181, Percent_Identity=30.3867403314917, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786319, Length=189, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786345, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789864, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787759, Length=201, Percent_Identity=30.8457711442786, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790739, Length=191, Percent_Identity=28.7958115183246, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789891, Length=187, Percent_Identity=30.4812834224599, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787143, Length=198, Percent_Identity=28.2828282828283, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1787112, Length=193, Percent_Identity=31.6062176165803, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787792, Length=155, Percent_Identity=30.3225806451613, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=169, Percent_Identity=37.8698224852071, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17558664, Length=200, Percent_Identity=31, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI115532730, Length=181, Percent_Identity=29.2817679558011, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=196, Percent_Identity=32.6530612244898, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=192, Percent_Identity=30.2083333333333, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=144, Percent_Identity=34.7222222222222, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=144, Percent_Identity=34.7222222222222, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=144, Percent_Identity=34.7222222222222, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=182, Percent_Identity=32.4175824175824, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=161, Percent_Identity=30.4347826086957, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=196, Percent_Identity=31.1224489795918, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17552010, Length=178, Percent_Identity=26.9662921348315, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319856, Length=185, Percent_Identity=27.5675675675676, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28574533, Length=156, Percent_Identity=34.6153846153846, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI19920532, Length=146, Percent_Identity=36.986301369863, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24580930, Length=146, Percent_Identity=36.986301369863, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28574744, Length=155, Percent_Identity=35.4838709677419, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17647959, Length=182, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24666836, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650855, Length=189, Percent_Identity=30.1587301587302, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24650853, Length=189, Percent_Identity=30.1587301587302, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI281362751, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666092, Length=179, Percent_Identity=27.9329608938547, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552199, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581407, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85725262, Length=186, Percent_Identity=29.5698924731183, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582014, Length=193, Percent_Identity=32.1243523316062, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582012, Length=193, Percent_Identity=32.1243523316062, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24643674, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85816269, Length=145, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580553, Length=145, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397593, Length=191, Percent_Identity=31.413612565445, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=145, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580555, Length=145, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85726357, Length=177, Percent_Identity=29.9435028248588, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24653245, Length=167, Percent_Identity=29.940119760479, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 22840; Mature: 22709

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGLSLRALRILRGDHPLLELDLTVPPATILSVMGPSGVGKSTLLAAITGQMSTDFSLE
CCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEC
GGIFLNGRDLCPLPPQARRVGILFQDHLLFPHLSVGANLAFGLAPHIRGRTRRARIKDAL
CCEEECCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
AEIGLEGFHDRDPETLSGGQKARVALMRMLLSEPDLLLLDEPFSRLDATLRSQMRDLVYT
HHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
FARDRALPVLMVTHDAADAEAAGGPIVQLEP
HHHCCCCEEEEEECCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
AEGLSLRALRILRGDHPLLELDLTVPPATILSVMGPSGVGKSTLLAAITGQMSTDFSLE
CCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEC
GGIFLNGRDLCPLPPQARRVGILFQDHLLFPHLSVGANLAFGLAPHIRGRTRRARIKDAL
CCEEECCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
AEIGLEGFHDRDPETLSGGQKARVALMRMLLSEPDLLLLDEPFSRLDATLRSQMRDLVYT
HHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
FARDRALPVLMVTHDAADAEAAGGPIVQLEP
HHHCCCCEEEEEECCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]