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The map label for this gene is ynjC [H]

Identifier: 99082092

GI number: 99082092

Start: 2367010

End: 2368707

Strand: Direct

Name: ynjC [H]

Synonym: TM1040_2252

Alternate gene names: 99082092

Gene position: 2367010-2368707 (Clockwise)

Preceding gene: 99082091

Following gene: 99082093

Centisome position: 73.95

GC content: 67.67

Gene sequence:

>1698_bases
GTGCGCCTCCCCCTCGCCCTGCCTCCGGTCTTGCCCGTCTTGACCATCCTGGTCCTGATCGGGCCGGTTCTGGCGGGGCT
GTGGGGGACAATCAGCGCCGCCTTCGGCCATCTGCCGGTGGCGGGGCTCTACGGGCCGTCGCTGCAGCCGTTTGAGGCGC
TCTGGAACTGGCCCGGCCTTGGGCCAGCGGTGCGCCTCAGCCTCGTCACGGGTGTGCTGGCGACACTCCTGTCGCTTTTG
ATTACACTTCTGTTGCTGGCGGGCTGGTCCGGCACCCGGCCCTTTCGGGCGGTGCTGCGGCTGCTGTCGCCGCTCCTGTC
CGTTCCACATGCGGCAGCCGCCTTTGGCCTGTTGTTCCTGATCCAACCCTCCGGCTGGATCGCCCGCGCCCTGAGCCCCT
GGCTCACCGGATGGCAGCGCCCGCCTGATGTTTTGCTGGTGCAGGACCCTTGGGGCCTTGCGATGACGCTTGGGCTTGTC
GTCAAGGAAGTCCCCTTCCTGTTGCTCATCAGCCTCGCCGCCCTGGGCCAGATCGACAGCCAAGGCCGTCTGCGTGTCGC
CATGGCGCTTGGCTACGGGCGTGTGGCGGCGTGGATCTTCGCGGTGGGGCCAGCCCTATATCAGCGCATCCGCCTGCCGA
TCTATGTGGTGCTGGCCTACTCCATGTCGGTGGTGGATGTGGCCGTGATCCTCGGCCCCAATACGCCGCCGCCCCTCTCG
GTGCAGATCGTGCGCTGGATGGCAGAGCCTGATCTCACGCTGCGCACGCTGGCCTCGGCGGGTGCGCTGGTGCAACTGGC
ACTGGTGATCGGCGCCCTTCTGCTGTGGCGCGGCGCAGAACGGGGGATCGCCGCGCTTGGCACGGGTCTGATCTATCGCG
GGTGGCGGTTTTCGCGCGATGGCCTCTGGCGCGCGCTTGGACTGGCCGCAGCCGCGACCTCTGTCGGGCTGGTGCTCGCG
GGGCTTTTGGGGCTGGTGGTCTGGTCCTTTGCCGCCCGGTGGAGCTTTCCCGACCTCCTGCCCGACGGAATGAGCCTGCG
CAGCTGGAGCCGCAACAGCCCCGCCGCACTTGAGACACTCGCCACCACCTTTGCCATCGCCGGTGCGGCCACGCTTGCAG
CGCTCGTTCTGACGCTCGGCTGTCTTGAGACCGAGGAGCGCCGCAACCTGCGCCTCACCCGCAAGGGGCTCTGGCTCTTG
TATTTACCGCTCCTGGTGCCGCAAACCGCGTTTTTGCCCGGCATGCAGACGCTTTTGCTGGGGTTTGGCATCGACCGCAC
GCTTTGGGCAGTGGTGCTGGCGCATCTTGTGTTTGTGCTGCCCTACCTGCGCCTGTCGCTCGAAGGCCCCTACAAGGCGT
GGGATCCGCGGCTTGGGGCCGTGGGCGCGGCCATGGGGGCCTCTCGGAACCGGATTTTTCTGCAACTCAGACTACCGATG
CTGCTGGCGCCGATCCTGACCGCAGTGGCCGTGGGCATGGCGGTCTCGGTCGGGCAATATCTGCCGACGCTTCTGGTCGG
AGGCGGACGCATCCAGACCCTCACCACCGAAGCCGTCGCCCTCGCCGCCGGTGGCGACCGCCGCGCCATTGGCCTATACG
GGCTGGTGCAGACGGCTGCGGCGCTCCTGCCCTTTGTGCTGGCGCTGGCCCTGCCGCTGTTCGTCTGGCGCAACCGAAGA
GGACTTCATCATGGCTGA

Upstream 100 bases:

>100_bases
GCCCTGTGCAGCCTGAACCGCACCCCAGCTGGATGACCCGCATCTCCGAGGACTGGGTGGCGCGCTACGGCGTTGGCAAC
TGATCCCCAGATCACTCCCT

Downstream 100 bases:

>100_bases
GGGCCTGAGCCTGCGTGCCCTGCGCATCCTGCGGGGCGACCATCCCCTGTTGGAACTCGACCTCACCGTGCCCCCCGCCA
CCATCCTGAGCGTGATGGGG

Product: ABC transporter, fused inner membrane subunits

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MRLPLALPPVLPVLTILVLIGPVLAGLWGTISAAFGHLPVAGLYGPSLQPFEALWNWPGLGPAVRLSLVTGVLATLLSLL
ITLLLLAGWSGTRPFRAVLRLLSPLLSVPHAAAAFGLLFLIQPSGWIARALSPWLTGWQRPPDVLLVQDPWGLAMTLGLV
VKEVPFLLLISLAALGQIDSQGRLRVAMALGYGRVAAWIFAVGPALYQRIRLPIYVVLAYSMSVVDVAVILGPNTPPPLS
VQIVRWMAEPDLTLRTLASAGALVQLALVIGALLLWRGAERGIAALGTGLIYRGWRFSRDGLWRALGLAAAATSVGLVLA
GLLGLVVWSFAARWSFPDLLPDGMSLRSWSRNSPAALETLATTFAIAGAATLAALVLTLGCLETEERRNLRLTRKGLWLL
YLPLLVPQTAFLPGMQTLLLGFGIDRTLWAVVLAHLVFVLPYLRLSLEGPYKAWDPRLGAVGAAMGASRNRIFLQLRLPM
LLAPILTAVAVGMAVSVGQYLPTLLVGGGRIQTLTTEAVALAAGGDRRAIGLYGLVQTAAALLPFVLALALPLFVWRNRR
GLHHG

Sequences:

>Translated_565_residues
MRLPLALPPVLPVLTILVLIGPVLAGLWGTISAAFGHLPVAGLYGPSLQPFEALWNWPGLGPAVRLSLVTGVLATLLSLL
ITLLLLAGWSGTRPFRAVLRLLSPLLSVPHAAAAFGLLFLIQPSGWIARALSPWLTGWQRPPDVLLVQDPWGLAMTLGLV
VKEVPFLLLISLAALGQIDSQGRLRVAMALGYGRVAAWIFAVGPALYQRIRLPIYVVLAYSMSVVDVAVILGPNTPPPLS
VQIVRWMAEPDLTLRTLASAGALVQLALVIGALLLWRGAERGIAALGTGLIYRGWRFSRDGLWRALGLAAAATSVGLVLA
GLLGLVVWSFAARWSFPDLLPDGMSLRSWSRNSPAALETLATTFAIAGAATLAALVLTLGCLETEERRNLRLTRKGLWLL
YLPLLVPQTAFLPGMQTLLLGFGIDRTLWAVVLAHLVFVLPYLRLSLEGPYKAWDPRLGAVGAAMGASRNRIFLQLRLPM
LLAPILTAVAVGMAVSVGQYLPTLLVGGGRIQTLTTEAVALAAGGDRRAIGLYGLVQTAAALLPFVLALALPLFVWRNRR
GLHHG
>Mature_565_residues
MRLPLALPPVLPVLTILVLIGPVLAGLWGTISAAFGHLPVAGLYGPSLQPFEALWNWPGLGPAVRLSLVTGVLATLLSLL
ITLLLLAGWSGTRPFRAVLRLLSPLLSVPHAAAAFGLLFLIQPSGWIARALSPWLTGWQRPPDVLLVQDPWGLAMTLGLV
VKEVPFLLLISLAALGQIDSQGRLRVAMALGYGRVAAWIFAVGPALYQRIRLPIYVVLAYSMSVVDVAVILGPNTPPPLS
VQIVRWMAEPDLTLRTLASAGALVQLALVIGALLLWRGAERGIAALGTGLIYRGWRFSRDGLWRALGLAAAATSVGLVLA
GLLGLVVWSFAARWSFPDLLPDGMSLRSWSRNSPAALETLATTFAIAGAATLAALVLTLGCLETEERRNLRLTRKGLWLL
YLPLLVPQTAFLPGMQTLLLGFGIDRTLWAVVLAHLVFVLPYLRLSLEGPYKAWDPRLGAVGAAMGASRNRIFLQLRLPM
LLAPILTAVAVGMAVSVGQYLPTLLVGGGRIQTLTTEAVALAAGGDRRAIGLYGLVQTAAALLPFVLALALPLFVWRNRR
GLHHG

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=525, Percent_Identity=31.6190476190476, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 60327; Mature: 60327

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPLALPPVLPVLTILVLIGPVLAGLWGTISAAFGHLPVAGLYGPSLQPFEALWNWPGL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCC
GPAVRLSLVTGVLATLLSLLITLLLLAGWSGTRPFRAVLRLLSPLLSVPHAAAAFGLLFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHE
IQPSGWIARALSPWLTGWQRPPDVLLVQDPWGLAMTLGLVVKEVPFLLLISLAALGQIDS
ECCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QGRLRVAMALGYGRVAAWIFAVGPALYQRIRLPIYVVLAYSMSVVDVAVILGPNTPPPLS
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCCCH
VQIVRWMAEPDLTLRTLASAGALVQLALVIGALLLWRGAERGIAALGTGLIYRGWRFSRD
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCC
GLWRALGLAAAATSVGLVLAGLLGLVVWSFAARWSFPDLLPDGMSLRSWSRNSPAALETL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
ATTFAIAGAATLAALVLTLGCLETEERRNLRLTRKGLWLLYLPLLVPQTAFLPGMQTLLL
HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
GFGIDRTLWAVVLAHLVFVLPYLRLSLEGPYKAWDPRLGAVGAAMGASRNRIFLQLRLPM
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHH
LLAPILTAVAVGMAVSVGQYLPTLLVGGGRIQTLTTEAVALAAGGDRRAIGLYGLVQTAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHEEECCCCCCCHHHHHHHHHHH
ALLPFVLALALPLFVWRNRRGLHHG
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRLPLALPPVLPVLTILVLIGPVLAGLWGTISAAFGHLPVAGLYGPSLQPFEALWNWPGL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCC
GPAVRLSLVTGVLATLLSLLITLLLLAGWSGTRPFRAVLRLLSPLLSVPHAAAAFGLLFL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHE
IQPSGWIARALSPWLTGWQRPPDVLLVQDPWGLAMTLGLVVKEVPFLLLISLAALGQIDS
ECCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QGRLRVAMALGYGRVAAWIFAVGPALYQRIRLPIYVVLAYSMSVVDVAVILGPNTPPPLS
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCCCH
VQIVRWMAEPDLTLRTLASAGALVQLALVIGALLLWRGAERGIAALGTGLIYRGWRFSRD
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCC
GLWRALGLAAAATSVGLVLAGLLGLVVWSFAARWSFPDLLPDGMSLRSWSRNSPAALETL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
ATTFAIAGAATLAALVLTLGCLETEERRNLRLTRKGLWLLYLPLLVPQTAFLPGMQTLLL
HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
GFGIDRTLWAVVLAHLVFVLPYLRLSLEGPYKAWDPRLGAVGAAMGASRNRIFLQLRLPM
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHH
LLAPILTAVAVGMAVSVGQYLPTLLVGGGRIQTLTTEAVALAAGGDRRAIGLYGLVQTAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHEEECCCCCCCHHHHHHHHHHH
ALLPFVLALALPLFVWRNRRGLHHG
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]