| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082019
Identifier: 99082019
GI number: 99082019
Start: 2290354
End: 2290785
Strand: Direct
Name: 99082019
Synonym: TM1040_2179
Alternate gene names: NA
Gene position: 2290354-2290785 (Clockwise)
Preceding gene: 99082014
Following gene: 99082020
Centisome position: 71.55
GC content: 60.88
Gene sequence:
>432_bases ATGACAGACACGCAAGGCCTCACCCCGCAGCACGCCTCCGTTGATGAGGAACGTCAGACCAAACCGGCCCTCTGGAAGGG CTGGCGCGGACGTTGCCCGAACTGCGGCGAAGGCAAACTGCTGCACAGCTATCTCAAGGTCAACGACAGCTGTTCTGAAT GTGGTGAGGAGTTCCATCACCACCGTGCCGACGATGGCCCCGCCTATCTGACGATCCTGATCGTGGGACACCTGATGGCC CCTTTGATGCACTATATGGCGTTTGAGTGGCGGCCCTCGCCCTGGGTCATGGCGTCGGTATTCTCGACCGGCTGTCTGGC GGCCTCGCTCTATCTGCTGCCGCATCTCAAGGGCGTGGTGGTTGCCTATCAATGGGCCCGCCGCATGCATGGGTTCGACA AGACGCCAAAAGAAAAGACCTCCGCCGCCTGA
Upstream 100 bases:
>100_bases ATACATCTGTGATTTGCATATTTGGGATAAACCATTGAAGTAATCACGACCACTGCACACGAATTATTACCCAAGCGCGC ATAGGTCACGGAGTATTTAG
Downstream 100 bases:
>100_bases TCGCCCCCTTTTCTTTCCATGTCAAAGACGTGACACTGCAAACGGCCCGCCCCTGCGGGCCGTTTTCTTCATGTCAGAGG GCACAGCGATGGCAGCGACC
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome C Oxidase Subunit III
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMA PLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA
Sequences:
>Translated_143_residues MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMA PLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA >Mature_142_residues TDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMAP LMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA
Specific function: Unknown
COG id: COG5349
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16096; Mature: 15964
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHH CCCCCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH HRADDGPAYLTILIVGHLMAPLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VAYQWARRMHGFDKTPKEKTSAA HHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHH CCCCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH HRADDGPAYLTILIVGHLMAPLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VAYQWARRMHGFDKTPKEKTSAA HHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA