Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082019

Identifier: 99082019

GI number: 99082019

Start: 2290354

End: 2290785

Strand: Direct

Name: 99082019

Synonym: TM1040_2179

Alternate gene names: NA

Gene position: 2290354-2290785 (Clockwise)

Preceding gene: 99082014

Following gene: 99082020

Centisome position: 71.55

GC content: 60.88

Gene sequence:

>432_bases
ATGACAGACACGCAAGGCCTCACCCCGCAGCACGCCTCCGTTGATGAGGAACGTCAGACCAAACCGGCCCTCTGGAAGGG
CTGGCGCGGACGTTGCCCGAACTGCGGCGAAGGCAAACTGCTGCACAGCTATCTCAAGGTCAACGACAGCTGTTCTGAAT
GTGGTGAGGAGTTCCATCACCACCGTGCCGACGATGGCCCCGCCTATCTGACGATCCTGATCGTGGGACACCTGATGGCC
CCTTTGATGCACTATATGGCGTTTGAGTGGCGGCCCTCGCCCTGGGTCATGGCGTCGGTATTCTCGACCGGCTGTCTGGC
GGCCTCGCTCTATCTGCTGCCGCATCTCAAGGGCGTGGTGGTTGCCTATCAATGGGCCCGCCGCATGCATGGGTTCGACA
AGACGCCAAAAGAAAAGACCTCCGCCGCCTGA

Upstream 100 bases:

>100_bases
ATACATCTGTGATTTGCATATTTGGGATAAACCATTGAAGTAATCACGACCACTGCACACGAATTATTACCCAAGCGCGC
ATAGGTCACGGAGTATTTAG

Downstream 100 bases:

>100_bases
TCGCCCCCTTTTCTTTCCATGTCAAAGACGTGACACTGCAAACGGCCCGCCCCTGCGGGCCGTTTTCTTCATGTCAGAGG
GCACAGCGATGGCAGCGACC

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome C Oxidase Subunit III

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMA
PLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA

Sequences:

>Translated_143_residues
MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMA
PLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA
>Mature_142_residues
TDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMAP
LMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA

Specific function: Unknown

COG id: COG5349

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16096; Mature: 15964

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHH
CCCCCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
HRADDGPAYLTILIVGHLMAPLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VAYQWARRMHGFDKTPKEKTSAA
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSYLKVNDSCSECGEEFHH
CCCCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
HRADDGPAYLTILIVGHLMAPLMHYMAFEWRPSPWVMASVFSTGCLAASLYLLPHLKGVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VAYQWARRMHGFDKTPKEKTSAA
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA