Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081991

Identifier: 99081991

GI number: 99081991

Start: 2258932

End: 2260680

Strand: Direct

Name: 99081991

Synonym: TM1040_2151

Alternate gene names: NA

Gene position: 2258932-2260680 (Clockwise)

Preceding gene: 99081989

Following gene: 99081992

Centisome position: 70.57

GC content: 57.8

Gene sequence:

>1749_bases
ATGAAGGTAAACTTCTGGACTTCATCGGCCCTGACCGGTGCGCTCGGTCGCCGGGCCATTGTGGACCGCATGCGTCAGTT
TCGCAGGGACGAAAGTGGTGTCCTTGCCAAGCCGATGATTATGATCGTGGTCTTGATGTTCATGATCGGCGGTCTGGGTA
TGGATATGGTACGCCTCGAACGCGACCGTACCAAACTGCAATACACTCTGGACCGCGCGGTACTTGCGGCAGCGGATCTC
GACCAGCCCCTCGATCCCGAGGCAGTGGTTCTCGATTACATGTCAAAGTCGGGCCTTGGCGATTACACCACGGTGGTCGT
CCCTGAGGTTTCACCCACGGCAAAGCGCGTAAAGGCGAGCGTCGATACCAATTTCACTGCATCCTGGATGAACAACGTCT
TTTACGACGACTACATCCGCAATCCCGATACTTACCAGCTTGAGCCAATCACACTCCCGCTGCTGGCGTCCTCAACGGCG
GTGGAGAGCATCGGCAACGTCGAGATCTCGCTGGTGCTGGACGTCTCGGGATCGATGCGCAGCAATGATCGCCTGGTGAA
CCTCAAACGCGCCGCCAAAGAGTTCGTCCAGACGATGGATGACAACACCGAAGACGGCAAGATGAGCATTTCCATCGTGC
CCTACTCGACACAGGTTTCCATGCCGGAGGCCTTTCTTGATGAGTTGAACGTCAGCAGCGAGCACGATTACTCCCACTGC
ATCAACTTCTCGGGGTCCGATTTCAACAACGCCGGGATCAGCACGACCCAGGCCTACGAGCGCACCATGCACTTCACCGT
CTGGAACAGCGGCGACTATCGCTCAAGAACCCGCCTCGTTCGTCAGCCGACCTGTGCCGCCCATTCCGACAACCCAGAGC
GCACCGCGCTGTTGTTGTCGGACAATGTCACGCAGCTGCAAAACTACATCGACGCCTTTGTCCCATCCGAGAACACATCG
ATTGACCTCGGCATGAAATGGGGCTCTGCCCTTCTCGACCCATCCGTGCAGCCCGTGATTGCCTCGCTGGCTGATGATGC
AAATCCCAATCAGTCCATCGCATCGCGCTTTGCCAACCGTCCCGTCCCCTACACGGATACAGAGACGCTGAAGGTGATCG
TGATGATGACCGACGGTCAGAATACGTCGCAGTACTACCTCAGGAACAGCTACCGCGAGGGCGACAGCCCGGTTTGGTAC
AACGCCCAAGAGCGTGTTTATTCCACCTATGACCCCAACCGCGGTTCAAAACCCTATTACTGGGACAACTTGCAGCGGTG
GGCGGATCACCCCTATGGCAACGGCACCTACGAGGAAACCTACTGCACCGGCACGCTCTACTACGGCAACTGCTATTACG
GGTCCTGGCAGACCCGCACCGTGGACGAGCCCGGCACGGCCGTACAGCTGAGCTATCCTGATCTCTTTGCCGACACCTCG
CTCAGGTATCTGCGGGATCGCCTGTTCGGCGACTGGATGAGCAACGCGAATTACTACTGGTTCTCCGGTCTGTTCAGCTC
TGTCGGCTCCACGACAAAGGACGCGCGCACGCTGGACATCTGTGAAGCGGCCAAAGCCAAGGGCGTTGTGGTCTTTACCA
TCGGGTTTGAGGCTCCGAGTCGAGGCCAGGAAGTCCTGCAGGCCTGCGCAAGCTCTGCATCCCATTACTACGATGTTGAC
GGGCTGGAGATCTCCGATGCCTTCGCTTCAATTGCCTCCGCGATCCGCCAACTGAGGCTGACAGAATGA

Upstream 100 bases:

>100_bases
CAACGAATAATGAAGAGTAATTTTACGTCCTCCTGCGCGCGCCCGCTTTCGCCCCTGAGCGCTGTGCGCCGTGCCCGCGG
ACAGAAGGAAAGACGGAAAC

Downstream 100 bases:

>100_bases
TCCATCTGCGTTTTATATCCAAACCGCTCCGGCAGTTCCGTCGCGATGAAGAAGGCAATGCAACCGTCGAGTTTGCAATG
CTCTTTCCCCTGATGCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADL
DQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA
VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC
INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTS
IDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWY
NAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS
LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD
GLEISDAFASIASAIRQLRLTE

Sequences:

>Translated_582_residues
MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADL
DQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA
VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC
INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTS
IDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWY
NAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS
LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD
GLEISDAFASIASAIRQLRLTE
>Mature_582_residues
MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADL
DQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA
VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC
INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTS
IDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWY
NAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS
LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVD
GLEISDAFASIASAIRQLRLTE

Specific function: Unknown

COG id: COG4961

COG function: function code U; Flp pilus assembly protein TadG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65223; Mature: 65223

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLE
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
RDRTKLQYTLDRAVLAAADLDQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKAS
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
VDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTAVESIGNVEISLVLDVSGSMR
CCCCEEHHHHHCCHHHHHCCCCCCEEECCEEEEEECCHHHHHHCCCEEEEEEEECCCCCC
SNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC
CCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHH
INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLS
CCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEE
DNVTQLQNYIDAFVPSENTSIDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANR
CCHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCC
PVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWYNAQERVYSTYDPNRGSKPYY
CCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCEEECHHHCEEECCCCCCCCCCEE
WDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS
HHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCCEEEEECCCHHHHHH
LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPS
HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC
RGQEVLQACASSASHYYDVDGLEISDAFASIASAIRQLRLTE
CHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVVLMFMIGGLGMDMVRLE
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
RDRTKLQYTLDRAVLAAADLDQPLDPEAVVLDYMSKSGLGDYTTVVVPEVSPTAKRVKAS
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
VDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTAVESIGNVEISLVLDVSGSMR
CCCCEEHHHHHCCHHHHHCCCCCCEEECCEEEEEECCHHHHHHCCCEEEEEEEECCCCCC
SNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQVSMPEAFLDELNVSSEHDYSHC
CCCCEEHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHH
INFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSRTRLVRQPTCAAHSDNPERTALLLS
CCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEE
DNVTQLQNYIDAFVPSENTSIDLGMKWGSALLDPSVQPVIASLADDANPNQSIASRFANR
CCHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCC
PVPYTDTETLKVIVMMTDGQNTSQYYLRNSYREGDSPVWYNAQERVYSTYDPNRGSKPYY
CCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCEEECHHHCEEECCCCCCCCCCEE
WDNLQRWADHPYGNGTYEETYCTGTLYYGNCYYGSWQTRTVDEPGTAVQLSYPDLFADTS
HHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCCEEEEECCCHHHHHH
LRYLRDRLFGDWMSNANYYWFSGLFSSVGSTTKDARTLDICEAAKAKGVVVFTIGFEAPS
HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC
RGQEVLQACASSASHYYDVDGLEISDAFASIASAIRQLRLTE
CHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA