Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081936

Identifier: 99081936

GI number: 99081936

Start: 2202126

End: 2203304

Strand: Reverse

Name: 99081936

Synonym: TM1040_2096

Alternate gene names: NA

Gene position: 2203304-2202126 (Counterclockwise)

Preceding gene: 99081937

Following gene: 99081935

Centisome position: 68.83

GC content: 61.07

Gene sequence:

>1179_bases
ATGGCGCATCACGAACGCGAAGGCCGGCCACAGTTTTCACAGCCGGTGCGTCAGGTTGTCATGATGCTGATTGCATTGGG
ACTGGCGGGGGCGGGCGCTTTTATGGCGTTGCCGCGGGTGATGCCGGTCTTTGAAGCCAATCCCTATCTTAATGGCTTTA
TCGCCTTTGTGTTCATCGTCGGGGTTTTGGCGACCTTCTGGCAGGTGATGCAGCTCATCAACTCGGTGCGCTGGATTGAA
CGCTTTGCCGCCGGGGTCACCACCGACGAGGATCGCGCGCCCTCGATGCTGGCGCCACTGGCTGCGCTCTTGCGCTCTCG
GGGCGCGCGGATGCAGCTTGGCTCGGCCTCGACCCGCTCAATTCTGGATTCCGTTGCAGAGCGCATCGACGAAGAGCGCG
AAATCACGCGATATATCGTCAACCTTTTGATTTTTCTTGGTCTTTTGGGGACGTTTTACGGTCTGGCGACCACGGTACCA
GCTGTTGTCGACACCATCCGCAGCCTTGCGCCCCAAGATGGCGAAGAGGGTGTCGCTATCTTTAACCGGCTGATGACGGG
ACTTGAATCGCAGCTGGGCGGTATGGGCGTGGCCTTTGCCTCCTCGCTTTTGGGGCTGGCGGGATCGCTCATCGTGGGCC
TGCTCGAACTCTTTGCGGGTCATGGGCAGAACCGCTTTTACCGCGAACTCGAGGAATGGCTGTCGTCCTTCACCCGTGTG
AGTTTTTCCTCGGGCGAGGAGGGCGGCACCGGCGACAGCAACCTCGTGGCGGGCGTGCTTGATACGATGGCGGAGCAGAT
GGACGCGCTTCAGGCGATGTTTGTGGAAACCGCTAAGGGACGCGCGGAGGTCGAAGGCAAGCTCTCGCGCCTGATCGACA
CCATTGAGGACATGAACCGCCGTCAGGATGATGTGGCGTCGATCTCCGGTGCGCTCGAGCGTGTCGCGGTTGGTCAGGAG
ACGCTCGCCGAACTGATGCGGGCCCATGGTGACGTTGGCATCGACGCCGAGAGCCGCATGCGCCTGCGTTCGATCGACGT
ACAAATGCTGCGCATCCTCGAGGAAATCTCCGCCGGACGGCAAGAGAGCCTCTCGGAGCTGCGCAAGGACATCGACCTGC
TGGTCAAAGCTTTCGCAGGCCCGCGTGGCATGGATCGCGCGGCGCGGAAAGAGAGCTAA

Upstream 100 bases:

>100_bases
GGTCCGACAGATTTTATCATAAATCCTTGGCGACCATGGGACTTTCGGTCTAGGCTGCAGGCGCAGAACCAAGACAAAGC
CTATCGGGAGCCGCAAAGAA

Downstream 100 bases:

>100_bases
CCCATGGCCCTCAAGCGGCGCACTGGTCAACGGTTTCAAGGCTCGATCTGGCCCGGTTTCGTGGATGCGATGACCGGACT
TTTGCTGGTTTTGATGTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: MotA/lQ/ExbB Proton Channel Family; Transmembrane Protein

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIE
RFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVP
AVVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV
SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQE
TLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES

Sequences:

>Translated_392_residues
MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIE
RFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVP
AVVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV
SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQE
TLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES
>Mature_391_residues
AHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIER
FAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVPA
VVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRVS
FSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQET
LAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42757; Mature: 42626

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GVLATFWQVMQLINSVRWIERFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHH
ILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVPAVVDTIRSLAPQDGEEGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
FNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNR
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RQDDVASISGALERVAVGQETLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
QESLSELRKDIDLLVKAFAGPRGMDRAARKES
HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
>Mature Secondary Structure 
AHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVFEANPYLNGFIAFVFIV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GVLATFWQVMQLINSVRWIERFAAGVTTDEDRAPSMLAPLAALLRSRGARMQLGSASTRS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCHHHHH
ILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVPAVVDTIRSLAPQDGEEGVAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
FNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVETAKGRAEVEGKLSRLIDTIEDMNR
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RQDDVASISGALERVAVGQETLAELMRAHGDVGIDAESRMRLRSIDVQMLRILEEISAGR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
QESLSELRKDIDLLVKAFAGPRGMDRAARKES
HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA