| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081923
Identifier: 99081923
GI number: 99081923
Start: 2187810
End: 2188334
Strand: Reverse
Name: 99081923
Synonym: TM1040_2083
Alternate gene names: NA
Gene position: 2188334-2187810 (Counterclockwise)
Preceding gene: 99081924
Following gene: 99081921
Centisome position: 68.37
GC content: 54.67
Gene sequence:
>525_bases GTGGCGAAACGAGAACCACTGACATTCTGGCAGTGGCATTTTTCGAAGACGAAACGGTTCACGATCCTTCTTTTTGGTGC CAATGCGGCTGGCCCTTTTTGCTTGTGGCTGCTGCTGAGCGGTGCTGCCGCGACCTCTGGGGATGCCTCTGTGGCGCGTT TACAGATGTCGCTTGTTTTATGGGTTGTCCTCTTGGCGGTGCTTTATTGGCTATTTCGCAAGGAAAGGCAGATCACGCCC GCCAAAATCTCCCAAGGCGATAAGATCCGGTTCAGGTCTATCCCGAGCGATTTGGACGCAGACCATATCCTGCACCCCAT CGAGCCTGCCACAAATGGCATGCCTCTGACGCAGCAGAAGATTTTCTCCTACTTGGTGACATGCGGCGATCATTTTACGG TCTATGACAGTGCCGCAGCGGGGGGCAAGGAATTGCACCTGAAGCTGTGTGTTGAGGATCGGATGCAGACCTACGTGGTC CCGGTTCCGGTCGACGACAGTTGGTATGTCTCGCGCTATGCTTGA
Upstream 100 bases:
>100_bases CACTTGGTCCGACAGCCGCGTCGCCCGCGTCCGCGCTGCCTGGATGGCGATCGGCGATCTGCCGTTTGAGGATGATTGGG ACGTGGAGTAGGGGGATCTC
Downstream 100 bases:
>100_bases ACCTAACCCTGCAGGCACGATAATCACCACGTCCAGAAGGCTGTTCTCTGTTGGCGGCAGAAAATCTCGTATTTCCTTAT TAGCACGCAGCGACCCTACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MAKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAATSGDASVARLQMSLVLWVVLLAVLYWLFRKERQITP AKISQGDKIRFRSIPSDLDADHILHPIEPATNGMPLTQQKIFSYLVTCGDHFTVYDSAAAGGKELHLKLCVEDRMQTYVV PVPVDDSWYVSRYA
Sequences:
>Translated_174_residues MAKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAATSGDASVARLQMSLVLWVVLLAVLYWLFRKERQITP AKISQGDKIRFRSIPSDLDADHILHPIEPATNGMPLTQQKIFSYLVTCGDHFTVYDSAAAGGKELHLKLCVEDRMQTYVV PVPVDDSWYVSRYA >Mature_173_residues AKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAATSGDASVARLQMSLVLWVVLLAVLYWLFRKERQITPA KISQGDKIRFRSIPSDLDADHILHPIEPATNGMPLTQQKIFSYLVTCGDHFTVYDSAAAGGKELHLKLCVEDRMQTYVVP VPVDDSWYVSRYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19662; Mature: 19531
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAATSGDASVARLQMSLVL CCCCCCCEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH WVVLLAVLYWLFRKERQITPAKISQGDKIRFRSIPSDLDADHILHPIEPATNGMPLTQQK HHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH IFSYLVTCGDHFTVYDSAAAGGKELHLKLCVEDRMQTYVVPVPVDDSWYVSRYA HHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEECC >Mature Secondary Structure AKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAATSGDASVARLQMSLVL CCCCCCEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH WVVLLAVLYWLFRKERQITPAKISQGDKIRFRSIPSDLDADHILHPIEPATNGMPLTQQK HHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH IFSYLVTCGDHFTVYDSAAAGGKELHLKLCVEDRMQTYVVPVPVDDSWYVSRYA HHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA