Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081918

Identifier: 99081918

GI number: 99081918

Start: 2181427

End: 2182290

Strand: Direct

Name: 99081918

Synonym: TM1040_2078

Alternate gene names: NA

Gene position: 2181427-2182290 (Clockwise)

Preceding gene: 99081917

Following gene: 99081922

Centisome position: 68.15

GC content: 61.34

Gene sequence:

>864_bases
ATGCACACCACTGATCTTCTGCGCCTTGCCGCTCTGGTTTTCACCGCCGTCACCTGTGTTGTGCTTGGCGATACCGCAGG
TAAAGTGCTGACCTCGGGCGGTGTGGATCCGGTGATCGTCGCTTGGGCACGCTTTGGACTTGGGGCTTTGGTGCTCCTGC
CGCTGAGTGGTCTGCGTCTTACCGAGCTGTCGATTGCCCGCGACTGGAGGGTCTGGCTCAGGGCAGGCTTTGTCACCGCC
GGGATTTCCTGCATTCTGACCGCGCTGCGCACAGAGCCGATCGCCAATGTGTTTGGCGCATTTTTTGTGGGGCCCGGCGT
TTCCTATGTGATTGCGGTCCTGTTCCTGGGCGAGCGCCCCTCGCCGCTGCGCAGCCTGCTGCTGGGGCTTGGGTTCATTG
GCGTCATGCTGGTGGTCAAACCCGGGTTCGGCGTGAGCTTTGGGCTGTTCTACGCGCTGGCGGCGGGGTGTTTCTATGGC
GCCTATCTGGCAATGACCCGCACCGTGGCCGGCAGCTATCGACCGCGACTTTTGTTGATGTCGCAGCTGCTGATCGGCAC
GCTGCTGCTGACCCCGATGGGGCTCAGCGTGGAGATGCCGACACTTGACTGGACGATCTTTACGCTCCTGTCGCTGAGCG
CGCTCGGTTCGGCAGTCGGGAACTATATTCTCGTGGTCGTGAACAAAACCGCCGAGGCCTCTCTGATTGCGCCGTTGGTC
TACAGCCAGTTGATTTCGGCAACTGTGCTGGGCGTCGTGGTTTTTGGCGAGTGGCCCGATGTGATTTCGCTTTGTGGTCT
TGGGCTGATCCTCCTGTCAGGGTTTGGCTCGCTTCTGGCCCATCAGCGCGCGACGCCGCTCTGA

Upstream 100 bases:

>100_bases
GCCCCGCGATATGACACTGCACACCAGAACATAGTGAGCGCTTTGGATCTCCAGCCGCAGCTGATAGGCAGGTGATACCC
TGTCCACCTTACGGTTCCCC

Downstream 100 bases:

>100_bases
GCGGTGAGGCGGCGCGCCTTGGCCCGCCACCGGATCCTCCAAGAGGGTCTCGCAGATGCGGCTCAGTCCACATCCGGCTC
GGTGAGATCAAGACTAGATG

Product: hypothetical protein

Products: NA

Alternate protein names: Permease Protein

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTA
GISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG
AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV
YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL

Sequences:

>Translated_287_residues
MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTA
GISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG
AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV
YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL
>Mature_287_residues
MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTA
GISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG
AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV
YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30203; Mature: 30203

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
TELSIARDWRVWLRAGFVTAGISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC
SPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYGAYLAMTRTVAGSYRPRLLLM
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV
HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHH
YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWARFGLGALVLLPLSGLRL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
TELSIARDWRVWLRAGFVTAGISCILTALRTEPIANVFGAFFVGPGVSYVIAVLFLGERP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC
SPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYGAYLAMTRTVAGSYRPRLLLM
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSAVGNYILVVVNKTAEASLIAPLV
HHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHH
YSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFGSLLAHQRATPL
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA