| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is penA [H]
Identifier: 99081857
GI number: 99081857
Start: 2119401
End: 2121182
Strand: Direct
Name: penA [H]
Synonym: TM1040_2017
Alternate gene names: 99081857
Gene position: 2119401-2121182 (Clockwise)
Preceding gene: 99081856
Following gene: 99081858
Centisome position: 66.21
GC content: 63.64
Gene sequence:
>1782_bases ATGATCCGCACGCCCCTGCGCCCCCTCGCCCGCATCCTGCCCGCCCGCGCGCGCGGCGAGAACCCCGACCTCATCGAGCG CGAAAACCTCGCCCAGCGCCACAGCGAGATGGAAGCCCGTGCCCGCACCCGCGCCGAGGGGCGTCTTCTGGTGCTCGCGG CCTTTTTTGTCTGCGCCTATGTGGCGATCGGCGGACGGATGGCGATGATGGCCACCTCGGAGCCGGCAGAGCCCGTTTCC GTGAGCGGCAGCGCCATCGCCAACCAGCGCGCCGACATCGTTGACCGCGAAGGCCGCATCCTCGCCACCAATTTCGAGAC CTTCTCGCTCTATGCCCAGCCGCCGCAGATGGTGGAGCCGCTGGTGGCGGCGGAAAAACTGGTCTCGATCTTTCCGGATC TCGATCACGAGCGTCTGGTCAAGGATTTCACAGGAAGCCGCAAGTTCCTCTGGATCAAGAAGAAAATCAGCCCCGAGCAA ATGCAGGCGGTGCATGACATCGGCGATCCCGGCCTGATGTTTGGCCCGCGCGAGATGCGCCTTTACCCCAACGGCAAGCT CGCCGCACATGTGCTGGGTGGGGCCTCTTTTGGCAAGGAAGGCGTGAACGCCGCCGAGGTGATCGGTGTTGCAGGCGTGG AAAAACAGTTCGATGACTACCTGCGTGACCCGGCCAATGGCGGCAAGCCGCTGGAATTGAGCCTCGATCTCTCGGTGCAG CACGCCACCGAAGAAGTACTCTATGGCGGCATGAAGCTGATGAACGCCAAGGGCGCAACCTCGATCCTGATGGATGTACA CACCGGCGAGGTGATCTCGGTGGCCTCGCTGCCCGATTTTGATCCCAACGAGCGCCCACGCCCGCCCACCTCGGGCTTTG ACCCGTCCGAAAGCCCGCTCTTCAACCGTGCCGTTCAGGGCGTCTATGAGCTTGGCTCGACCTTCAAGATCTTTGCCGCG GCTCAGGCCATCGAGCTTGGCCTTGTGAACCCGGAAACCGTGATCGACACCCGCGGCCCATTGCGCTGGGGCAAATTCTC CATCCGGGATTTTCGCAACTACGGCAACGAGATGACCGTCTCGCGCATCATCGAAAAGTCCTCCAACATCGGGACCGCGC GGCTCGCGCAGCAGATCGGAGCCGAACGCCAGCGCGCCTTCCTCGGAGAGCTTGGCATGTTGGAGCCGACCCCGTTTGAG ATCGTCGAAGCGTCGGGCGGCCAGCCGCTCTTGCCGAGAAACTGGTCGGAGCTGTCGACCATGACCATTTCCTATGGTCA CGGGATTTCAACCACGCCGATGCATCTGGCGGCGGGCTATGCGGCCATTGCCAATGGCGGCCGGCTCGTGAAACCCACGA TCCTTAAGCAGACCGGCCCCCGCCTCGGGGAGCGCGTGCTCAGCAAAGAGGTTGCCGAGGCTTCACTCGAGATGCTGCGC AGGGTGGTGAGCAGCGGCTCTGCCTCCATGGCCGAGGTCGAAGGCTACAGCGTGGGCGGCAAGACCGGCACCGCTGACAA GCCCAAGCCCCGTGGCGGCTATTACGAAGACAAGGTGATCGCGACCTTTGCCGCCGTTTTCCCCACGGATGCGCCGAAAT ATGTGCTGATCGTGACCCTGGATGAACCCGAGATCATCGCCTATGGCGAGGACCGCCGCACCGCCGGCTGGACCGCCGCG CCCGTCGCCGCCGAGATGATCGCGCGCCTTGCGCCGCTCCTTGGGCTCAGACCACAGATTGAACCTGCCCGTATCTCTGG TGTAACCCTCACCTCAAACTAA
Upstream 100 bases:
>100_bases CGGAACAATTTGGACGCGTGGACGAGGTGTCCTTTCCGCCCTCGGGTCTGGTGATCGAAGAAGGCGTCGAGGTCTCCTCT TATGGACAGGAGGCCGATCA
Downstream 100 bases:
>100_bases CAGGTGGGGACGCCATGACACAGAGACCAGCGCTCAAGCTCAGCCAGTTGGGACTGACCGCAAGAGCGGGCCTGGACCCG CAGATCACGGGGCTTGCGGT
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTRAEGRLLVLAAFFVCAYVAIGGRMAMMATSEPAEPVS VSGSAIANQRADIVDREGRILATNFETFSLYAQPPQMVEPLVAAEKLVSIFPDLDHERLVKDFTGSRKFLWIKKKISPEQ MQAVHDIGDPGLMFGPREMRLYPNGKLAAHVLGGASFGKEGVNAAEVIGVAGVEKQFDDYLRDPANGGKPLELSLDLSVQ HATEEVLYGGMKLMNAKGATSILMDVHTGEVISVASLPDFDPNERPRPPTSGFDPSESPLFNRAVQGVYELGSTFKIFAA AQAIELGLVNPETVIDTRGPLRWGKFSIRDFRNYGNEMTVSRIIEKSSNIGTARLAQQIGAERQRAFLGELGMLEPTPFE IVEASGGQPLLPRNWSELSTMTISYGHGISTTPMHLAAGYAAIANGGRLVKPTILKQTGPRLGERVLSKEVAEASLEMLR RVVSSGSASMAEVEGYSVGGKTGTADKPKPRGGYYEDKVIATFAAVFPTDAPKYVLIVTLDEPEIIAYGEDRRTAGWTAA PVAAEMIARLAPLLGLRPQIEPARISGVTLTSN
Sequences:
>Translated_593_residues MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTRAEGRLLVLAAFFVCAYVAIGGRMAMMATSEPAEPVS VSGSAIANQRADIVDREGRILATNFETFSLYAQPPQMVEPLVAAEKLVSIFPDLDHERLVKDFTGSRKFLWIKKKISPEQ MQAVHDIGDPGLMFGPREMRLYPNGKLAAHVLGGASFGKEGVNAAEVIGVAGVEKQFDDYLRDPANGGKPLELSLDLSVQ HATEEVLYGGMKLMNAKGATSILMDVHTGEVISVASLPDFDPNERPRPPTSGFDPSESPLFNRAVQGVYELGSTFKIFAA AQAIELGLVNPETVIDTRGPLRWGKFSIRDFRNYGNEMTVSRIIEKSSNIGTARLAQQIGAERQRAFLGELGMLEPTPFE IVEASGGQPLLPRNWSELSTMTISYGHGISTTPMHLAAGYAAIANGGRLVKPTILKQTGPRLGERVLSKEVAEASLEMLR RVVSSGSASMAEVEGYSVGGKTGTADKPKPRGGYYEDKVIATFAAVFPTDAPKYVLIVTLDEPEIIAYGEDRRTAGWTAA PVAAEMIARLAPLLGLRPQIEPARISGVTLTSN >Mature_593_residues MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTRAEGRLLVLAAFFVCAYVAIGGRMAMMATSEPAEPVS VSGSAIANQRADIVDREGRILATNFETFSLYAQPPQMVEPLVAAEKLVSIFPDLDHERLVKDFTGSRKFLWIKKKISPEQ MQAVHDIGDPGLMFGPREMRLYPNGKLAAHVLGGASFGKEGVNAAEVIGVAGVEKQFDDYLRDPANGGKPLELSLDLSVQ HATEEVLYGGMKLMNAKGATSILMDVHTGEVISVASLPDFDPNERPRPPTSGFDPSESPLFNRAVQGVYELGSTFKIFAA AQAIELGLVNPETVIDTRGPLRWGKFSIRDFRNYGNEMTVSRIIEKSSNIGTARLAQQIGAERQRAFLGELGMLEPTPFE IVEASGGQPLLPRNWSELSTMTISYGHGISTTPMHLAAGYAAIANGGRLVKPTILKQTGPRLGERVLSKEVAEASLEMLR RVVSSGSASMAEVEGYSVGGKTGTADKPKPRGGYYEDKVIATFAAVFPTDAPKYVLIVTLDEPEIIAYGEDRRTAGWTAA PVAAEMIARLAPLLGLRPQIEPARISGVTLTSN
Specific function: Synthesis of cross-linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=569, Percent_Identity=26.1862917398945, Blast_Score=184, Evalue=1e-47, Organism=Escherichia coli, GI1786854, Length=434, Percent_Identity=24.8847926267281, Blast_Score=107, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 64234; Mature: 64234
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTRAEGRLLVLAAFFVCAY CCCCCHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VAIGGRMAMMATSEPAEPVSVSGSAIANQRADIVDREGRILATNFETFSLYAQPPQMVEP HHHCCCEEEEECCCCCCCCCCCCHHHHCCCHHHCCCCCCEEEECCEEEEEECCCHHHHHH LVAAEKLVSIFPDLDHERLVKDFTGSRKFLWIKKKISPEQMQAVHDIGDPGLMFGPREMR HHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCEECCCCEE LYPNGKLAAHVLGGASFGKEGVNAAEVIGVAGVEKQFDDYLRDPANGGKPLELSLDLSVQ ECCCCCEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCHH HATEEVLYGGMKLMNAKGATSILMDVHTGEVISVASLPDFDPNERPRPPTSGFDPSESPL HHHHHHHHCCHHEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHH FNRAVQGVYELGSTFKIFAAAQAIELGLVNPETVIDTRGPLRWGKFSIRDFRNYGNEMTV HHHHHHHHHHCCCCEEEHHHHHHHEEECCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHH SRIIEKSSNIGTARLAQQIGAERQRAFLGELGMLEPTPFEIVEASGGQPLLPRNWSELST HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCCCHHHEE MTISYGHGISTTPMHLAAGYAAIANGGRLVKPTILKQTGPRLGERVLSKEVAEASLEMLR EEEEECCCCCCCCHHHHHCHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHH RVVSSGSASMAEVEGYSVGGKTGTADKPKPRGGYYEDKVIATFAAVFPTDAPKYVLIVTL HHHHCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE DEPEIIAYGEDRRTAGWTAAPVAAEMIARLAPLLGLRPQIEPARISGVTLTSN CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECEEEECC >Mature Secondary Structure MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTRAEGRLLVLAAFFVCAY CCCCCHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VAIGGRMAMMATSEPAEPVSVSGSAIANQRADIVDREGRILATNFETFSLYAQPPQMVEP HHHCCCEEEEECCCCCCCCCCCCHHHHCCCHHHCCCCCCEEEECCEEEEEECCCHHHHHH LVAAEKLVSIFPDLDHERLVKDFTGSRKFLWIKKKISPEQMQAVHDIGDPGLMFGPREMR HHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCEECCCCEE LYPNGKLAAHVLGGASFGKEGVNAAEVIGVAGVEKQFDDYLRDPANGGKPLELSLDLSVQ ECCCCCEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCHH HATEEVLYGGMKLMNAKGATSILMDVHTGEVISVASLPDFDPNERPRPPTSGFDPSESPL HHHHHHHHCCHHEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHH FNRAVQGVYELGSTFKIFAAAQAIELGLVNPETVIDTRGPLRWGKFSIRDFRNYGNEMTV HHHHHHHHHHCCCCEEEHHHHHHHEEECCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHH SRIIEKSSNIGTARLAQQIGAERQRAFLGELGMLEPTPFEIVEASGGQPLLPRNWSELST HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCCCHHHEE MTISYGHGISTTPMHLAAGYAAIANGGRLVKPTILKQTGPRLGERVLSKEVAEASLEMLR EEEEECCCCCCCCHHHHHCHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHH RVVSSGSASMAEVEGYSVGGKTGTADKPKPRGGYYEDKVIATFAAVFPTDAPKYVLIVTL HHHHCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE DEPEIIAYGEDRRTAGWTAAPVAAEMIARLAPLLGLRPQIEPARISGVTLTSN CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3126399 [H]