Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081828

Identifier: 99081828

GI number: 99081828

Start: 2092447

End: 2092764

Strand: Direct

Name: 99081828

Synonym: TM1040_1988

Alternate gene names: NA

Gene position: 2092447-2092764 (Clockwise)

Preceding gene: 99081826

Following gene: 99081829

Centisome position: 65.37

GC content: 59.75

Gene sequence:

>318_bases
ATGCGAGATTTCGTTGACGGCACCGCATACAACAACGAACAGGGCAACCGAGCACGCAAACTGTTTGCGGCGGTTGTACT
GGCTGCACTGGATGATGCCATTGCCGACGACAAGAAATACGGCAACGGCCCCGAGCAGATCGCCCGCTGGGCACGTTCGC
GCGATGGGCGCGAAGTTTTGACCTGCGCAGGCATCGACCCCAATGAACGTGTGGTCGAAGGCCTGATGGAATTCGTTGGT
CGTGGTGTACGGACCTCTGTCGCGCTGTCGCGCGAAGAAAGTGAACGTCGTAATGCGGCGCAGGCCGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
CATAAAAGATATGCATCTTTGGGCTACCCGAATCGTCACAATTCCGCCATAAGGAGCGTCACGCCGAAAATGCAATAGCA
AGAACAACAAAGGAAACGAG

Downstream 100 bases:

>100_bases
ACGCAAAATCAGCTGCCAAGCTTTAGAGAAAAGCGCGTCCTGGGGGGCGCGTTTTTCTTTTTGCGCCCTTCCTTTTTGAT
ACGCCCCCGGCCCGACCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVLTCAGIDPNERVVEGLMEFVG
RGVRTSVALSREESERRNAAQAEAA

Sequences:

>Translated_105_residues
MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVLTCAGIDPNERVVEGLMEFVG
RGVRTSVALSREESERRNAAQAEAA
>Mature_105_residues
MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVLTCAGIDPNERVVEGLMEFVG
RGVRTSVALSREESERRNAAQAEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11512; Mature: 11512

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEE
TCAGIDPNERVVEGLMEFVGRGVRTSVALSREESERRNAAQAEAA
EECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGPEQIARWARSRDGREVL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEE
TCAGIDPNERVVEGLMEFVGRGVRTSVALSREESERRNAAQAEAA
EECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA