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The map label for this gene is ymdB [H]

Identifier: 99081742

GI number: 99081742

Start: 2003515

End: 2004327

Strand: Reverse

Name: ymdB [H]

Synonym: TM1040_1901

Alternate gene names: 99081742

Gene position: 2004327-2003515 (Counterclockwise)

Preceding gene: 99081744

Following gene: 99081740

Centisome position: 62.62

GC content: 61.13

Gene sequence:

>813_bases
ATGCGTATACTGTTTCTTGGCGATGTCATGGGCCGCGCGGGGCGTGCGGCGATAACCGAAACCCTGCCGCGTCTGCGCGA
CGAATGGCGGCTCGATTTTGTCGTGGTGAACGGCGAAAACGCCTCCAACGGCATGGGGCTGTCTGGCGAGCACGCCAAGA
TCCTGTTCGAAGCAGGGGCGGATTGCGTGACGCTTGGCGATCATGCGTTCGACCAGAAAGACATGCTCCAGTATATCGAA
CAGGACAGCCGTATCGTGCGCCCATTGAACTTTGCCAAGGGGGCGCCGGGGCGGGGACATCGGCTGTTCACCGCGCGCGG
CGGGCAGAAGGTTCTGGTGCTGCAGGCGCTGGGGCAGGTGTTTATGAAACGCGCCTTTGATGATCCTTTTGGAGCGGTCG
AAGGCGTGCTGAAATCCCATCCTCGCGGTGGGCTGGCGCAGGCGATCATTGTCGATATGCATTGCGAAGCCACCTCGGAG
AAAATGGCGATGGGGCATTTCTGCAATGGCAAGGCCTCGCTTGTGGTGGGCACCCATACGCATGTGCCAACCGGGGATGC
ACAGATCCTTGAAGGCGGCACTGCCTATCTGACGGACGCGGGCATGTGCGGCGACTATAATTCCGTGATTGGCATGGATA
AGGCGGAACCGATGCGTCGGTTCCTCACTGGCATGCCCAAAAGCCGCTTCACCCCGGCAACCGGGGCGGCAACGCTTTCG
GGCGTCTATGTGGAAACCGATGACCGCACCGGCGCCGCCAAACGCATCGAGATGGTGCGTCAGGGTGGCCTCTTGCAACA
AGCCGCGCCCTAA

Upstream 100 bases:

>100_bases
CGAGGTCTTCGCTCTGGTCAGGGCGCAGAGGCGATGTGTTTGCGCCGTCTCAGCGGCATTGCCCCTTGTGGCGGGCGGTC
TCTGCGCCTATTGCGGGGAC

Downstream 100 bases:

>100_bases
CCGCGCGCCCGCCACGCAAAACCGGGGCGCTCCCGCCCGTCGTCATGCTTTTTGAAAAAAGCCCTCCTCCCGTTGGGCCG
GGCCGCGCACGCTTTGCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNGMGLSGEHAKILFEAGADCVTLGDHAFDQKDMLQYIE
QDSRIVRPLNFAKGAPGRGHRLFTARGGQKVLVLQALGQVFMKRAFDDPFGAVEGVLKSHPRGGLAQAIIVDMHCEATSE
KMAMGHFCNGKASLVVGTHTHVPTGDAQILEGGTAYLTDAGMCGDYNSVIGMDKAEPMRRFLTGMPKSRFTPATGAATLS
GVYVETDDRTGAAKRIEMVRQGGLLQQAAP

Sequences:

>Translated_270_residues
MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNGMGLSGEHAKILFEAGADCVTLGDHAFDQKDMLQYIE
QDSRIVRPLNFAKGAPGRGHRLFTARGGQKVLVLQALGQVFMKRAFDDPFGAVEGVLKSHPRGGLAQAIIVDMHCEATSE
KMAMGHFCNGKASLVVGTHTHVPTGDAQILEGGTAYLTDAGMCGDYNSVIGMDKAEPMRRFLTGMPKSRFTPATGAATLS
GVYVETDDRTGAAKRIEMVRQGGLLQQAAP
>Mature_270_residues
MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNGMGLSGEHAKILFEAGADCVTLGDHAFDQKDMLQYIE
QDSRIVRPLNFAKGAPGRGHRLFTARGGQKVLVLQALGQVFMKRAFDDPFGAVEGVLKSHPRGGLAQAIIVDMHCEATSE
KMAMGHFCNGKASLVVGTHTHVPTGDAQILEGGTAYLTDAGMCGDYNSVIGMDKAEPMRRFLTGMPKSRFTPATGAATLS
GVYVETDDRTGAAKRIEMVRQGGLLQQAAP

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29008; Mature: 29008

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNGMGLSGEHAKILFEAGA
CEEEEEEHHHCCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
DCVTLGDHAFDQKDMLQYIEQDSRIVRPLNFAKGAPGRGHRLFTARGGQKVLVLQALGQV
CEEEECCCCCCHHHHHHHHHHCCCEECCHHHCCCCCCCCCEEEEECCCCEEHHHHHHHHH
FMKRAFDDPFGAVEGVLKSHPRGGLAQAIIVDMHCEATSEKMAMGHFCNGKASLVVGTHT
HHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCCCEEEEEECCC
HVPTGDAQILEGGTAYLTDAGMCGDYNSVIGMDKAEPMRRFLTGMPKSRFTPATGAATLS
CCCCCCCEEECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEE
GVYVETDDRTGAAKRIEMVRQGGLLQQAAP
EEEEEECCCCCHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure
MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNGMGLSGEHAKILFEAGA
CEEEEEEHHHCCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
DCVTLGDHAFDQKDMLQYIEQDSRIVRPLNFAKGAPGRGHRLFTARGGQKVLVLQALGQV
CEEEECCCCCCHHHHHHHHHHCCCEECCHHHCCCCCCCCCEEEEECCCCEEHHHHHHHHH
FMKRAFDDPFGAVEGVLKSHPRGGLAQAIIVDMHCEATSEKMAMGHFCNGKASLVVGTHT
HHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCCCEEEEEECCC
HVPTGDAQILEGGTAYLTDAGMCGDYNSVIGMDKAEPMRRFLTGMPKSRFTPATGAATLS
CCCCCCCEEECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEE
GVYVETDDRTGAAKRIEMVRQGGLLQQAAP
EEEEEECCCCCHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]