| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081708
Identifier: 99081708
GI number: 99081708
Start: 1967864
End: 1968388
Strand: Direct
Name: 99081708
Synonym: TM1040_1867
Alternate gene names: NA
Gene position: 1967864-1968388 (Clockwise)
Preceding gene: 99081704
Following gene: 99081719
Centisome position: 61.48
GC content: 64.38
Gene sequence:
>525_bases ATGAACAGATTGCAACGTCTTACGCTGCTCGCCGCCCTGACCGCCTTGCCGTTGGCCCAGTCCGTTTCTGCGCAAGAGGC CGAGGGCCAAAGCCCTGCCCCGGATGCCACCTTGAGCGAAGATGCCGCGCCTGCGGATCTGAGCGCCGAAGAGGCCGCAC CCGCGTTTGAAATCCGCGACGGATATGACGTGGATATTGCCGAGTACCAATGGACCCACCGCCCGGTGGTGGTCTTTGCC GACAGCCCCGCAGACCCGCGATACCAGGAGCAGATCGACGAGCTGTTGCAGGACATCCCGGCGTTGATGACGCGGGATGT GGTGGTCTTTGTCGACACCGACCCGAAGGCGCGCTCGGCGCTGCGCAAAAAGCTGCGCCCGCGGGGGTTTATGCTGGTGC TGCTCGGCAAGGACGGCGGCGTGAAACTGCGCAAACCGCTGCCCTGGAGCGTGCGCGAATTGAGCCGTACCATCGACAAG ATGCCCATGCGCCAGCGGGAGATCGAAGCGCGCCGGGAAGGGTAA
Upstream 100 bases:
>100_bases TTCCCTCACGCTTAACGAAAGGTGATTTTTTTGTGGCCGCAGGGTTTCAGCGGTCGCTTTTACGTCGAGAGCACATATAT TTACGCTCAAAGGAGTGCCC
Downstream 100 bases:
>100_bases GCCTCGGCGCTGCCGCGTGTATGTCGCGCCGCACGCCGCCCGCAGCAAGCCACGTCATGTGTCGCGACACTGTCCTGTTT CGCGCCACTCTCTTGTGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAPADLSAEEAAPAFEIRDGYDVDIAEYQWTHRPVVVFA DSPADPRYQEQIDELLQDIPALMTRDVVVFVDTDPKARSALRKKLRPRGFMLVLLGKDGGVKLRKPLPWSVRELSRTIDK MPMRQREIEARREG
Sequences:
>Translated_174_residues MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAPADLSAEEAAPAFEIRDGYDVDIAEYQWTHRPVVVFA DSPADPRYQEQIDELLQDIPALMTRDVVVFVDTDPKARSALRKKLRPRGFMLVLLGKDGGVKLRKPLPWSVRELSRTIDK MPMRQREIEARREG >Mature_174_residues MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAPADLSAEEAAPAFEIRDGYDVDIAEYQWTHRPVVVFA DSPADPRYQEQIDELLQDIPALMTRDVVVFVDTDPKARSALRKKLRPRGFMLVLLGKDGGVKLRKPLPWSVRELSRTIDK MPMRQREIEARREG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19432; Mature: 19432
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAPADLSAEEAAPAFEIRD CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECC GYDVDIAEYQWTHRPVVVFADSPADPRYQEQIDELLQDIPALMTRDVVVFVDTDPKARSA CCCCCHHHEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHH LRKKLRPRGFMLVLLGKDGGVKLRKPLPWSVRELSRTIDKMPMRQREIEARREG HHHHCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC >Mature Secondary Structure MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAPADLSAEEAAPAFEIRD CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECC GYDVDIAEYQWTHRPVVVFADSPADPRYQEQIDELLQDIPALMTRDVVVFVDTDPKARSA CCCCCHHHEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHH LRKKLRPRGFMLVLLGKDGGVKLRKPLPWSVRELSRTIDKMPMRQREIEARREG HHHHCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA