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The map label for this gene is yliC [C]

Identifier: 99081662

GI number: 99081662

Start: 1915660

End: 1916616

Strand: Direct

Name: yliC [C]

Synonym: TM1040_1821

Alternate gene names: 99081662

Gene position: 1915660-1916616 (Clockwise)

Preceding gene: 99081661

Following gene: 99081663

Centisome position: 59.85

GC content: 57.89

Gene sequence:

>957_bases
ATGAATCCGGTGATCAAACTATTGGCTCAGCGCATTGCGCTGAGTCTCTTCCTGCTGTTGATGATCTCGGCGCTGATCTT
TGCGGGCACCATGATCCTGCCCGGCGACGTCGCCCAGTCCATCCTCGGCCAATCCGCAACCCCCGAGGCGCTCGCCAACC
TGCGCGCCGAGCTTGGACTGAACGAACCCGCCCTCACGCGCTATTTCGACTGGCTTTTTGGTGCCTTGCAAGGCGATCTT
GGCACCGCTCTGACCTCTGGTCAGGACATCACTTCCGCCATTGGATCGCGCCTCTCGAACACGCTGTTCCTTGCGTTCTG
GGCCGCTGTGATCGCCGTGCCGCTGGCGATTTTCCTCGGTCTTCTGGCCGTGCGCTACAAAGATCGCTGGCCGGACAAGC
TGATTTCCGGCGTCACATTGGCGTCGATCTCCATTCCTGAATTCCTGATCGGTTACGTTCTGATGTATCTGATCGCCGTA
AAACTGCGCTGGTTTCCCTCTGTCGCCATGATCAACGACGGCATGAACCTGTGGCAGAAGCTCAATTCCATCGCCCTGCC
CGTCGCGGTGCTGACGCTTGTGGTGCTTGCCCACATGATGCGCATGACCCGTGCGGCGATCCTCAACGTGATGCAGTCCG
CCTATATCGAGACTGCGGAACTCAAGGGGCTTTCGACCTTCAAGGTGATCTGGCGTCATGCCTTCCCCAACTCGATCGCG
CCGATCGTGAATGTGGTGATGCTGAACCTCGCCTATCTTGTGGTTGGTGTCGTGGTGATCGAAGTGGTCTTCGTCTATCC
CGGCATGGGGCAATATCTGGTGGATCATGTCTCCAAACGTGACGTGCCGGTGGTGCAGGCCTGTGGTCTGATCTTTGCCA
CCGTCTATATCGGCCTCAACATGGTTGCCGATATCGTGTCGATCCTGTCGAACCCGCGTCTGAGGCATCCGAAATGA

Upstream 100 bases:

>100_bases
GATGCAACGTCGGATCGTCTGGACGGCTGGAAAGACGGCGTCAAAGGTCACGCTCTCATGAACGGTTACGCGCCCCTGAA
AATGTGGGTCAAAGCCTGAT

Downstream 100 bases:

>100_bases
AGAATATCCCCGTATCCGCTCTGATCGGGCTGTTTTTCACGGCCCTCTACTTTCTCGGCGCACTTTTTGCGCCGCTCCTG
GCCCCCTATGGCATGGCCGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQSATPEALANLRAELGLNEPALTRYFDWLFGALQGDL
GTALTSGQDITSAIGSRLSNTLFLAFWAAVIAVPLAIFLGLLAVRYKDRWPDKLISGVTLASISIPEFLIGYVLMYLIAV
KLRWFPSVAMINDGMNLWQKLNSIALPVAVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGLSTFKVIWRHAFPNSIA
PIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDHVSKRDVPVVQACGLIFATVYIGLNMVADIVSILSNPRLRHPK

Sequences:

>Translated_318_residues
MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQSATPEALANLRAELGLNEPALTRYFDWLFGALQGDL
GTALTSGQDITSAIGSRLSNTLFLAFWAAVIAVPLAIFLGLLAVRYKDRWPDKLISGVTLASISIPEFLIGYVLMYLIAV
KLRWFPSVAMINDGMNLWQKLNSIALPVAVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGLSTFKVIWRHAFPNSIA
PIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDHVSKRDVPVVQACGLIFATVYIGLNMVADIVSILSNPRLRHPK
>Mature_318_residues
MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQSATPEALANLRAELGLNEPALTRYFDWLFGALQGDL
GTALTSGQDITSAIGSRLSNTLFLAFWAAVIAVPLAIFLGLLAVRYKDRWPDKLISGVTLASISIPEFLIGYVLMYLIAV
KLRWFPSVAMINDGMNLWQKLNSIALPVAVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGLSTFKVIWRHAFPNSIA
PIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDHVSKRDVPVVQACGLIFATVYIGLNMVADIVSILSNPRLRHPK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=298, Percent_Identity=34.8993288590604, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=31.2684365781711, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=30.188679245283, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=26.7100977198697, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787761, Length=303, Percent_Identity=27.7227722772277, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=23.9852398523985, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=25.886524822695, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34718; Mature: 34718

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQSATPEALANLRAELGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC
NEPALTRYFDWLFGALQGDLGTALTSGQDITSAIGSRLSNTLFLAFWAAVIAVPLAIFLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVRYKDRWPDKLISGVTLASISIPEFLIGYVLMYLIAVKLRWFPSVAMINDGMNLWQK
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHH
LNSIALPVAVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGLSTFKVIWRHAFPNSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
PIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDHVSKRDVPVVQACGLIFATVYIGLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
MVADIVSILSNPRLRHPK
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQSATPEALANLRAELGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC
NEPALTRYFDWLFGALQGDLGTALTSGQDITSAIGSRLSNTLFLAFWAAVIAVPLAIFLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVRYKDRWPDKLISGVTLASISIPEFLIGYVLMYLIAVKLRWFPSVAMINDGMNLWQK
HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHH
LNSIALPVAVLTLVVLAHMMRMTRAAILNVMQSAYIETAELKGLSTFKVIWRHAFPNSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
PIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDHVSKRDVPVVQACGLIFATVYIGLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
MVADIVSILSNPRLRHPK
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]