Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is yebZ [C]

Identifier: 99081583

GI number: 99081583

Start: 1837357

End: 1838223

Strand: Reverse

Name: yebZ [C]

Synonym: TM1040_1742

Alternate gene names: 99081583

Gene position: 1838223-1837357 (Counterclockwise)

Preceding gene: 99081584

Following gene: 99081582

Centisome position: 57.43

GC content: 62.75

Gene sequence:

>867_bases
ATGCCGGATATTTGGGCGCAGGCCGCGATACTGGTAAAAGTGCTCCTGTATGTGGGGGCATTGGGTGCAACCGGTCTGGT
GATGATACGGCTGATCTTTGCCGCACAGACGGCACCAGCCGAGGCGCTGTTGCGCCGACAAATCCGAAGTCTTGGAGCGG
TCGCTCTGATCGCGGCGGGCCTTGGCTTCAGCTTGCAGGGGGCCGCGTTGACCGGGGGGCTCGACGGGATGACCGACCCC
GAGATGCTTGGTCTTTTGTGGCAAACCCCGGTGGGGGATGTGCTGCTCTACCGGCTGATCGGCGCGAGTCTGCTTGTGGT
TGGGCCTGCATTCTTGCGTGTCGGCGAATGGGGCGCCTTGGCGGGAGGGTGTTTGTTGCTCTGGTCTTTTGCGCAGGTCG
GACATGTGCCGAACCTCGCGCAGACCGGCGTCCAAGCGCTGTTGTTTCTGCATCTTCTAGGGGTTGCGTTCTGGATCGGG
GTTCTGTCGCCATTGCACTGGTTGTGCCAACGGCGCGACCACCTGCAGGCGGCGGCGCAGCTTGGCCATCGCTTTGGACA
GATTGCCCAATATGGTGTGCCCGCACTTGTCGGTGCGGGGGCGGTGTTGGGGGCCTTGCTTCTCGGGAGTGTCTCGGCGT
TGCTGGGCACGTCTTACGGGCTGGCCTTTGTGACCAAGATTGCGCTTGTTGGCGCGATCCTTGCTCTGGCGGCAGCAAAC
AAGCTGCGGTTTGTTCCGGCGATGGCGGCAGGCGACAGTGCGGCTGCGCGCCATCTTGCCATATCCTTGCGGGTTGAGGG
CGCTGCCTTTTTGGCAGTGCTCAGCGCAACCGCGGCATTGACCAGCCTGTTTTCCGTGCCCGGTTGA

Upstream 100 bases:

>100_bases
TGAACGACATGGGGGCGGGCACCTACCAGATCGAGTGGCGCGGGCTCAGCATTGACGGCCATGCGATGCAGGGCGGCTTT
ACTTTCGAAGTGGAGTAAGC

Downstream 100 bases:

>100_bases
GCGAGCAGCCACACAGCCGACGGGAAAAACAGAAAATTCGCGTGGCCGGGAGGGACCGCATCCTCCGGGCCATGTTTACC
CGCCGATGCACCGGGGGGAT

Product: copper resistance D

Products: NA

Alternate protein names: Copper Resistance D Domain Protein

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDP
EMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIG
VLSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN
KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG

Sequences:

>Translated_288_residues
MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDP
EMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIG
VLSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN
KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG
>Mature_287_residues
PDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDPE
MLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIGV
LSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAANK
LRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG

Specific function: Unknown

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Integral membrane protein. Inner membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29504; Mature: 29372

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCHHHHCCCHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAG
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
LGFSLQGAALTGGLDGMTDPEMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGAL
CCCCCCCCHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIGVLSPLHWLCQRRDHLQAAAQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG
HHHCCHHHHCCCHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA