| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yebZ [C]
Identifier: 99081583
GI number: 99081583
Start: 1837357
End: 1838223
Strand: Reverse
Name: yebZ [C]
Synonym: TM1040_1742
Alternate gene names: 99081583
Gene position: 1838223-1837357 (Counterclockwise)
Preceding gene: 99081584
Following gene: 99081582
Centisome position: 57.43
GC content: 62.75
Gene sequence:
>867_bases ATGCCGGATATTTGGGCGCAGGCCGCGATACTGGTAAAAGTGCTCCTGTATGTGGGGGCATTGGGTGCAACCGGTCTGGT GATGATACGGCTGATCTTTGCCGCACAGACGGCACCAGCCGAGGCGCTGTTGCGCCGACAAATCCGAAGTCTTGGAGCGG TCGCTCTGATCGCGGCGGGCCTTGGCTTCAGCTTGCAGGGGGCCGCGTTGACCGGGGGGCTCGACGGGATGACCGACCCC GAGATGCTTGGTCTTTTGTGGCAAACCCCGGTGGGGGATGTGCTGCTCTACCGGCTGATCGGCGCGAGTCTGCTTGTGGT TGGGCCTGCATTCTTGCGTGTCGGCGAATGGGGCGCCTTGGCGGGAGGGTGTTTGTTGCTCTGGTCTTTTGCGCAGGTCG GACATGTGCCGAACCTCGCGCAGACCGGCGTCCAAGCGCTGTTGTTTCTGCATCTTCTAGGGGTTGCGTTCTGGATCGGG GTTCTGTCGCCATTGCACTGGTTGTGCCAACGGCGCGACCACCTGCAGGCGGCGGCGCAGCTTGGCCATCGCTTTGGACA GATTGCCCAATATGGTGTGCCCGCACTTGTCGGTGCGGGGGCGGTGTTGGGGGCCTTGCTTCTCGGGAGTGTCTCGGCGT TGCTGGGCACGTCTTACGGGCTGGCCTTTGTGACCAAGATTGCGCTTGTTGGCGCGATCCTTGCTCTGGCGGCAGCAAAC AAGCTGCGGTTTGTTCCGGCGATGGCGGCAGGCGACAGTGCGGCTGCGCGCCATCTTGCCATATCCTTGCGGGTTGAGGG CGCTGCCTTTTTGGCAGTGCTCAGCGCAACCGCGGCATTGACCAGCCTGTTTTCCGTGCCCGGTTGA
Upstream 100 bases:
>100_bases TGAACGACATGGGGGCGGGCACCTACCAGATCGAGTGGCGCGGGCTCAGCATTGACGGCCATGCGATGCAGGGCGGCTTT ACTTTCGAAGTGGAGTAAGC
Downstream 100 bases:
>100_bases GCGAGCAGCCACACAGCCGACGGGAAAAACAGAAAATTCGCGTGGCCGGGAGGGACCGCATCCTCCGGGCCATGTTTACC CGCCGATGCACCGGGGGGAT
Product: copper resistance D
Products: NA
Alternate protein names: Copper Resistance D Domain Protein
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDP EMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIG VLSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG
Sequences:
>Translated_288_residues MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDP EMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIG VLSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG >Mature_287_residues PDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDPE MLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIGV LSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAANK LRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG
Specific function: Unknown
COG id: COG1276
COG function: function code P; Putative copper export protein
Gene ontology:
Cell location: Integral membrane protein. Inner membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29504; Mature: 29372
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAG CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC LGFSLQGAALTGGLDGMTDPEMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGAL CCCCCCCCHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIGVLSPLHWLCQRRDHLQAAAQ HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG HHHCCHHHHCCCHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALLRRQIRSLGAVALIAAG CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC LGFSLQGAALTGGLDGMTDPEMLGLLWQTPVGDVLLYRLIGASLLVVGPAFLRVGEWGAL CCCCCCCCHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH AGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIGVLSPLHWLCQRRDHLQAAAQ HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTSYGLAFVTKIALVGAILALAAAN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSATAALTSLFSVPG HHHCCHHHHCCCHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA