| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dicA [C]
Identifier: 99081574
GI number: 99081574
Start: 1828049
End: 1828450
Strand: Reverse
Name: dicA [C]
Synonym: TM1040_1733
Alternate gene names: 99081574
Gene position: 1828450-1828049 (Counterclockwise)
Preceding gene: 99081577
Following gene: 99081573
Centisome position: 57.12
GC content: 62.69
Gene sequence:
>402_bases ATGACCGACACGACGAGCGACTGGTATGGCCCCGATGCCGCAACTTTTGGAGATCGCGTCGCGGCCGCACGTGAAAGCGC TGGCATGACACAAGGCCAGCTGGCACGCCGTATGGGGGTGAAAAAATCCACCCTGATCGGTTGGGAGCAGGATCTGTCCG AGCCCCGGGCCAACAAACTCTCGACGCTCTCGGGGATTCTCAATGTATCGATGAGCTGGCTGCTGACCGGCGAAGGCGAT GAGCTCTCGGCGCCCAATGAGGACACGCTGGGCGAAGATATGGCCGCTATCGCCCGCGAATTGCGCAGCCTTCGCGAGGA GCTGCGTCAGCAGGCCGAACGCGCCGGACGTCTGGAGAAAAGCCTGCGCCGTCTTGTTGCCACGCAGGAGGCGGCTGAAT GA
Upstream 100 bases:
>100_bases CAGAAAGAACGGACATGTCGGACCTCGATTTGAATGTCATCTGCAAAACTCTTAGGGTGGCGCCAAACGGCAATCAAGTC GTCCACTTAGGAGAGACCGC
Downstream 100 bases:
>100_bases TCGAAGCGCAGGCCAACATCGAAGAAAGCCGCGAGACCCGTATCAAGCGCCTGACCATGCGCTCGATGCGGCGCGGTATC AAGGAAATGGACATTCTCCT
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; XRE Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcription Regulator Protein
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MTDTTSDWYGPDAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSMSWLLTGEGD ELSAPNEDTLGEDMAAIARELRSLREELRQQAERAGRLEKSLRRLVATQEAAE
Sequences:
>Translated_133_residues MTDTTSDWYGPDAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSMSWLLTGEGD ELSAPNEDTLGEDMAAIARELRSLREELRQQAERAGRLEKSLRRLVATQEAAE >Mature_132_residues TDTTSDWYGPDAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSMSWLLTGEGDE LSAPNEDTLGEDMAAIARELRSLREELRQQAERAGRLEKSLRRLVATQEAAE
Specific function: This Protein Is A Repressor Of Division Inhibition Gene Dicb. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14568; Mature: 14437
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTTSDWYGPDAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKL CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCHHHHCCCHHHHH STLSGILNVSMSWLLTGEGDELSAPNEDTLGEDMAAIARELRSLREELRQQAERAGRLEK HHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLRRLVATQEAAE HHHHHHHHHHCCC >Mature Secondary Structure TDTTSDWYGPDAATFGDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKL CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCHHHHCCCHHHHH STLSGILNVSMSWLLTGEGDELSAPNEDTLGEDMAAIARELRSLREELRQQAERAGRLEK HHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLRRLVATQEAAE HHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA