| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081532
Identifier: 99081532
GI number: 99081532
Start: 1784602
End: 1786695
Strand: Direct
Name: 99081532
Synonym: TM1040_1691
Alternate gene names: NA
Gene position: 1784602-1786695 (Clockwise)
Preceding gene: 99081531
Following gene: 99081533
Centisome position: 55.75
GC content: 61.13
Gene sequence:
>2094_bases ATGACCGCACAGCTTCCCCTTGAATTCCTTGACGCAGCGCGGGTTTACGAGCGCCCCTTGATTGTCGACAGCTTTGCGGG CGGCGGCGGGGCCAGCACTGGCATTGAGCTCGCTCTCGACCGTAGTCCGGATATCGCGATCAATCATGATCCGGCAGCGC TTGCGCTACATGAAGCGAACCACCCCGAGGCGTTACACCTTTCGGAGAACGTATATCGCATTGACCCGCTTGAGCATTTG AGTGGAAAGCACATCGGCCTGATGTGGTTCAGCCCCGATTGCAAGCACTTCTCCAAGGCCAAGGGCGGTAAGCCGGTAGC TCGCAACATCCGCGATCTCGCTTGGATTATTCCGGGCTGGATCGAAAGGATTCAGAAGAGCGGCGGCAAGGTCGACGTAG TTCTTATGGAGAATGTCGAGGAGTTCGCTGGCTGGGGGCCACTGATCGAGACCGACAAAGGCCTGATGCCGTGCCCAGAG CGCAAGGGGGAAACGTTCGAAGCGTGGTGCAAAAAGATCCGCAGCCTTGGTGGCAAGCTAGAGCGAAGAGAACTCCGAGG CTGTGACTACGGAGCGCCAACAATTCGCAAGCGCCTATTTGTGGCGATCCGCTTTGATGGGGAGCCTGTCAGTTGGCCCA CGCCCACACACGGCGATCCCAACAGCGCCGAGGTGAAGTCGGGCAAGCTCAAACCGTGGCGAACCGCAGCAGAATGTATC GACTGGAGTCACCCTTGCCCCTCGATTTTCGACAGCAAGGCCGAGATCATGGAAAAATACGGACTGCGCTCGGTGCGCCC TCTGGCCCACAACACGCTTGCGCGCGTGGCTCGTGGCCTGCATCGCTATGTTCTGCAGGCTGAGCGTCCGTTTCTGGTGA ACCTGACCCACGGCGGGCGCGTCGAGGACGTCGCAGAACCCTTCAAGACAATCACGGGGGCCAACCGGGGCGAAAAGGCG ATTGTTGCGCCCTCCCTTGTCAGCGTCGCGCATGGCGATAGCGGCGGTCGTCGAAAATACCCACTGACCGATCCATATGG CGTTGTAACGGCCGGAGGCGTTTCAAACGCACTCATTGCCCCCAGCATTGCACGTTTCACCACTGGCGGAACCGGACACC AAATCAAATCTCCCCTCGCAACGGTCCCGGCAAACAGCTTCATCAAGCGCCCAGGTGGTGCCGCCCCGCTTGGAGTGCTG GCACCGTACCTTGCCACCATGCGCAACAGCCTGAAGCCTTGGCAGGAGGTAACGAAGCCCACCCACACCGTCACGGCGGG CGGCGCAGGCCTTACGCTTTGCGCGCCCCACCTGATGAGCCTGAAAGGCACTGCGCGCCGGGATCGTGCTGCAGACGCAC CTCATCCGACCGTTCTGGCCGGAGGCGGCCACTCCGCTCTCATGGCCCCCGTCTTGACCTACGCACAACAGGGCGGAGCC AATCGCTCTATGCTGGACCCGCATCATACGATCTGCGCGAGCAAAAAGGACCAGAACAGCCTGTTCTCGGCCTTTCTCGC CCAGCAAAACGGCGGACCGCGCATGGCGGGGCACAGTGGCCATGATCCCCGCGAGCCGATTTCCACCGTCACCGGCAGCG GGAGCCAGCAGACGCCGGTGGCCGCGTTCTTCGCCAAATATTACGGCACCGGTGATGGAGCGCGCGCGGACGCTCCGCTG CACACTATCACAGTCAAGGATCGCATGGCGCATTGCCAAGCGGATGTGATCCCAGCTCCACCGTTCACTGACGCCCATAC GGAGCGCGCCCGCCAAGTCGCAAGCCTGATGCGCGACCATGGCCTTTGGGATGAACGCGAGTTCGTCACACTCGAGATCG AGGGGCAAGCTTTCATCATCGTAGATGTCGGTATGCGCATGCTCACCCCGCGAGAGCTCTTCAACGCCCAAGGCTTCCCT GCAGACTACGTGATCGAGGGAATTTGGAAGCAGGAAAGCGATGACTGGACCTTTTCCACGTTCCCCAAGGACGTGCAGGT CCGGTGCGTGGGCAATAGCGTCTGCCCACCAGTGGCCGAGGCGCTGGTGCGCGCCAACTGTTCGCACCTTATCGAGATGG AGGACTCGCAGTGA
Upstream 100 bases:
>100_bases AGAACGAAGCGGCCCGCCTATACAGCGAATGGCGCGCCTTACCGAAACCCCGTCCTGAGTTCCTTACCTGGGCACACACC AAGCGAGAGAAGACCGCAGC
Downstream 100 bases:
>100_bases GCCCGCAAACGCTCTTACGCCAGCGCATTGAGGCTCACCGTCGCGCGATACGATCCGGGGATCTCATCGAGATCAATCGC ACGTGGGACGATCTGGAGCA
Product: C-5 cytosine-specific DNA methylase
Products: NA
Alternate protein names: Site-Specific DNA Methylase; DNA Cytosine Methyltransferase; Methylase; Cytosine-Specific Methylase; C-5 Cytosine-Specific DNA Methylase Family Protein; DNA-Methyltransferase; Prophage LambdaSo Type II DNA Methyltransferase; Prophage DNA Cytosine Methylase; DNA Methyltransferase; DNA Methylase; DNA Cytosine Methyltransferase Family Protein; C-5 Cytosine-Specific DNA Methylase Superfamily
Number of amino acids: Translated: 697; Mature: 696
Protein sequence:
>697_residues MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSENVYRIDPLEHL SGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPE RKGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKA IVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVL APYLATMRNSLKPWQEVTKPTHTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPL HTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFP ADYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ
Sequences:
>Translated_697_residues MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSENVYRIDPLEHL SGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPE RKGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKA IVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVL APYLATMRNSLKPWQEVTKPTHTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPL HTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFP ADYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ >Mature_696_residues TAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEANHPEALHLSENVYRIDPLEHLS GKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGWIERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPER KGETFEAWCKKIRSLGGKLERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECID WSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGRVEDVAEPFKTITGANRGEKAI VAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIAPSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLA PYLATMRNSLKPWQEVTKPTHTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGAN RSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPVAAFFAKYYGTGDGARADAPLH TITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDHGLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFPA DYVIEGIWKQESDDWTFSTFPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ
Specific function: Unknown
COG id: COG0270
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75570; Mature: 75439
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEAN CCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCEEECCCCCEEEEECCC HPEALHLSENVYRIDPLEHLSGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGW CCCEEEECCCEEEECCHHHCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHH IERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPERKGETFEAWCKKIRSLGGKL HHHHHHCCCCEEEEEECCHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHH ERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI HHHHHCCCCCCCHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGR CCCCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC VEDVAEPFKTITGANRGEKAIVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIA HHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHC PSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLAPYLATMRNSLKPWQEVTKP CHHHHHCCCCCCCHHCCCHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC THTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA CEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPV CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHH AAFFAKYYGTGDGARADAPLHTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDH HHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC GLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFPADYVIEGIWKQESDDWTFST CCCCCCEEEEEEECCCEEEEEECCHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEC FPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ CCCCEEEEECCCCCCHHHHHHHHHHCCHHEEEECCCC >Mature Secondary Structure TAQLPLEFLDAARVYERPLIVDSFAGGGGASTGIELALDRSPDIAINHDPAALALHEAN CCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCEEECCCCCEEEEECCC HPEALHLSENVYRIDPLEHLSGKHIGLMWFSPDCKHFSKAKGGKPVARNIRDLAWIIPGW CCCEEEECCCEEEECCHHHCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHH IERIQKSGGKVDVVLMENVEEFAGWGPLIETDKGLMPCPERKGETFEAWCKKIRSLGGKL HHHHHHCCCCEEEEEECCHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHH ERRELRGCDYGAPTIRKRLFVAIRFDGEPVSWPTPTHGDPNSAEVKSGKLKPWRTAAECI HHHHHCCCCCCCHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH DWSHPCPSIFDSKAEIMEKYGLRSVRPLAHNTLARVARGLHRYVLQAERPFLVNLTHGGR CCCCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC VEDVAEPFKTITGANRGEKAIVAPSLVSVAHGDSGGRRKYPLTDPYGVVTAGGVSNALIA HHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHC PSIARFTTGGTGHQIKSPLATVPANSFIKRPGGAAPLGVLAPYLATMRNSLKPWQEVTKP CHHHHHCCCCCCCHHCCCHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC THTVTAGGAGLTLCAPHLMSLKGTARRDRAADAPHPTVLAGGGHSALMAPVLTYAQQGGA CEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC NRSMLDPHHTICASKKDQNSLFSAFLAQQNGGPRMAGHSGHDPREPISTVTGSGSQQTPV CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHH AAFFAKYYGTGDGARADAPLHTITVKDRMAHCQADVIPAPPFTDAHTERARQVASLMRDH HHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC GLWDEREFVTLEIEGQAFIIVDVGMRMLTPRELFNAQGFPADYVIEGIWKQESDDWTFST CCCCCCEEEEEEECCCEEEEEECCHHHCCHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEC FPKDVQVRCVGNSVCPPVAEALVRANCSHLIEMEDSQ CCCCEEEEECCCCCCHHHHHHHHHHCCHHEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA