Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081478

Identifier: 99081478

GI number: 99081478

Start: 1742333

End: 1743016

Strand: Direct

Name: 99081478

Synonym: TM1040_1637

Alternate gene names: NA

Gene position: 1742333-1743016 (Clockwise)

Preceding gene: 99081477

Following gene: 99081480

Centisome position: 54.43

GC content: 51.02

Gene sequence:

>684_bases
TTGAAAATATTCAACATGCCAGAGAAAAGTCATCAGAGGTATGTGACTTGGCTAGAGCGCCGGGTTACCGAGCACTGCTA
TACCCATCAAGTGAGTCTCAATGACGCTTCGAAGAGAACCGGGAACAGCAGAAGCTTTCTGTCCAGCCTCTTCAAACGGC
AAAGCGACATAGGGATCGGCCGATTTTTCAGAATATGTGAGGCACTGTCAATCAAACCCGACGCTCAGCTCCTCGATATC
GCCGAAGGCAACGCCCCCTCCATCGATGAGGTAACGGATCTTGTAGCCCTCCGAACAAACAGCCCACTACCTACAACAAT
TCTTGATTTTATAGTCATCTACGCAGTTCCCGAGCCTGACGACACTACCCTCTCACTCCTACACCTCGGTGAAAAAAGCC
TCGCAGCACGCGTATTGCCGATCCAATCGAACGACATGCTTCAAAGGGCGGTGGATAATTTTCCCGCCGCCGATCGCAAG
AAGCTTGTCACTTCTTACCAACTCGCTGGGAAAGGTACCTGCCTTATTTCGATTGAAACCCTTGCAACACACGTGCACGG
CCAGCCCGAAGTAAACGAACTCATGTATAAGCGCCTGCTATTCCCGGTCAAAGATTTCAATGGCAAACCAGCCGTCGGCG
TCTATGCAATACCAGCGTCTAGTCGCGCCAACTCCAGCACTTGA

Upstream 100 bases:

>100_bases
GTTTGAAATCCAGTAAATCACTCAGATTTCCCTCAAAATACAACCATAGCACGATAGAAGCACTACGCGCTCTGCCTATG
TCAAAATCAATCTTAGCTCA

Downstream 100 bases:

>100_bases
TCACGCCGCGAGAAGCAGCAAGCCTCGTGACTACCCCTGCCTTCTGGGAAGGGCTGAGACCAAACCTGAGCCTGCGGAAT
GCAGGACATCAAGCCCAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALSIKPDAQLLDI
AEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRK
KLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST

Sequences:

>Translated_227_residues
MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALSIKPDAQLLDI
AEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRK
KLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST
>Mature_227_residues
MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIGRFFRICEALSIKPDAQLLDI
AEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPDDTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRK
KLVTSYQLAGKGTCLISIETLATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25243; Mature: 25243

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCCHHHHHHHHHHHHCCCCHH
RFFRICEALSIKPDAQLLDIAEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPD
HHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCC
DTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRKKLVTSYQLAGKGTCLISIET
CCEEHHHHHCCHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHH
LATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKIFNMPEKSHQRYVTWLERRVTEHCYTHQVSLNDASKRTGNSRSFLSSLFKRQSDIGIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCCHHHHHHHHHHHHCCCCHH
RFFRICEALSIKPDAQLLDIAEGNAPSIDEVTDLVALRTNSPLPTTILDFIVIYAVPEPD
HHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCC
DTTLSLLHLGEKSLAARVLPIQSNDMLQRAVDNFPAADRKKLVTSYQLAGKGTCLISIET
CCEEHHHHHCCHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEHHH
LATHVHGQPEVNELMYKRLLFPVKDFNGKPAVGVYAIPASSRANSST
HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA