Click here to switch to the map view.

The map label for this gene is sohB [C]

Identifier: 99081464

GI number: 99081464

Start: 1730142

End: 1731089

Strand: Reverse

Name: sohB [C]

Synonym: TM1040_1623

Alternate gene names: 99081464

Gene position: 1731089-1730142 (Counterclockwise)

Preceding gene: 99081465

Following gene: 99081463

Centisome position: 54.08

GC content: 64.35

Gene sequence:

>948_bases
ATGAAACAGGAATTGACGGCGCTGGTTGCGGCCATTCGGGCGCAGCCCTGGGCGATCATGCCGGATTATCTCGATGCGAT
CGAAGCCATCGCGCTGCGCGCCCTTGATGAAGACGTGCTGAAGCGGATCGCGCAGGACGGCCACATTCCGCGCCTCGAAG
GCAATTTGTCGGCCGTTGCGGCGGTAGGAACGCGCCTCGAGGGAGCTGGGATGAGCACTGTCCGCGACGGATCCGCCGTG
GTGCCGATGTTCGGGCCGATTTTTCCACGGGCATCGATGATTAACGCTTCTTCCGACGGAACTTCCTTGAACGCATTTAT
GCGGGACATCCGCGTGGCGCAGGCGTCGACCGATGTGCATCGGATCGTCGTGGTGGTGGATAGCCCGGGCGGCGTGGTCT
CCGGGCTCGGCGAAGCGTCTGAAACGCTGCGTGCCACCACAAAGCCGATCACCGCCTTTGTCACCGGCAACTGCGCCTCG
GCGGCTTATTGGCTCTGCAGCCAATTTGGCGAGATCGTGATGGATCGCTCTGCGGCGGTCGGCTCGATCGGGGTGGTCGC
GTCGCTGTCCCGGCAGGAGGCGGCGGATAACCAGGGGCGCCGGTCTTATGAGATCGTCAGCAGCAATGCCCCGAACAAAC
GTCCGGATCCGTCCACGGAAGAGGGCCGGACGGCCATCCAGAAAGACATCGACGCCATAGAGGAGGTGTTCATCGCAGAT
GTGGCCGCCGGTCGCCGCGTCTCGGCCGATCGCGTGCGAAGCGATTTTGGCCGCGGCGCAATGCTCTCGGCCACGCGCGC
CATCGAGGCGGGCATGGCTGATCGCATTGGCACACTTGAGGGGGTGCTGACTGAAGGTTCCGGGCGCACCCGGAAAACTG
GAGCGGGTCGCAGTGCGCACGCGGCCGCTGAAATCGAAACGCGGCGGCGCGCCGCAATGAGGAACTGA

Upstream 100 bases:

>100_bases
AAGGCAATGCGGGGACGGACTACTGGATGCCGGCGAACATGCAAGTAGCCGGAGCATCTGCGGCGCCGGGCAGCACCGAA
GACACCAGCGGAGACCAATC

Downstream 100 bases:

>100_bases
CCATGGATAAGATCCTGGAACTGCGAGCCCGCCGCGCGGGTATCATCGACCGTATGGACGCGCTGGTTGCGTCAATCGGC
GATGGGGAGGAATGGACAGA

Product: serine peptidase

Products: NA

Alternate protein names: Serine Peptidase; Head-Tail Preconnector Protein; Protease Protein; Peptidase

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKQELTALVAAIRAQPWAIMPDYLDAIEAIALRALDEDVLKRIAQDGHIPRLEGNLSAVAAVGTRLEGAGMSTVRDGSAV
VPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVHRIVVVVDSPGGVVSGLGEASETLRATTKPITAFVTGNCAS
AAYWLCSQFGEIVMDRSAAVGSIGVVASLSRQEAADNQGRRSYEIVSSNAPNKRPDPSTEEGRTAIQKDIDAIEEVFIAD
VAAGRRVSADRVRSDFGRGAMLSATRAIEAGMADRIGTLEGVLTEGSGRTRKTGAGRSAHAAAEIETRRRAAMRN

Sequences:

>Translated_315_residues
MKQELTALVAAIRAQPWAIMPDYLDAIEAIALRALDEDVLKRIAQDGHIPRLEGNLSAVAAVGTRLEGAGMSTVRDGSAV
VPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVHRIVVVVDSPGGVVSGLGEASETLRATTKPITAFVTGNCAS
AAYWLCSQFGEIVMDRSAAVGSIGVVASLSRQEAADNQGRRSYEIVSSNAPNKRPDPSTEEGRTAIQKDIDAIEEVFIAD
VAAGRRVSADRVRSDFGRGAMLSATRAIEAGMADRIGTLEGVLTEGSGRTRKTGAGRSAHAAAEIETRRRAAMRN
>Mature_315_residues
MKQELTALVAAIRAQPWAIMPDYLDAIEAIALRALDEDVLKRIAQDGHIPRLEGNLSAVAAVGTRLEGAGMSTVRDGSAV
VPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVHRIVVVVDSPGGVVSGLGEASETLRATTKPITAFVTGNCAS
AAYWLCSQFGEIVMDRSAAVGSIGVVASLSRQEAADNQGRRSYEIVSSNAPNKRPDPSTEEGRTAIQKDIDAIEEVFIAD
VAAGRRVSADRVRSDFGRGAMLSATRAIEAGMADRIGTLEGVLTEGSGRTRKTGAGRSAHAAAEIETRRRAAMRN

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.- [C]

Molecular weight: Translated: 33210; Mature: 33210

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQELTALVAAIRAQPWAIMPDYLDAIEAIALRALDEDVLKRIAQDGHIPRLEGNLSAVA
CCHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AVGTRLEGAGMSTVRDGSAVVPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVH
HHHHHCCCCCCCEECCCCEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEE
RIVVVVDSPGGVVSGLGEASETLRATTKPITAFVTGNCASAAYWLCSQFGEIVMDRSAAV
EEEEEEECCCCHHHHCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
GSIGVVASLSRQEAADNQGRRSYEIVSSNAPNKRPDPSTEEGRTAIQKDIDAIEEVFIAD
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAAGRRVSADRVRSDFGRGAMLSATRAIEAGMADRIGTLEGVLTEGSGRTRKTGAGRSAH
HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHH
AAAEIETRRRAAMRN
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQELTALVAAIRAQPWAIMPDYLDAIEAIALRALDEDVLKRIAQDGHIPRLEGNLSAVA
CCHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
AVGTRLEGAGMSTVRDGSAVVPMFGPIFPRASMINASSDGTSLNAFMRDIRVAQASTDVH
HHHHHCCCCCCCEECCCCEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEE
RIVVVVDSPGGVVSGLGEASETLRATTKPITAFVTGNCASAAYWLCSQFGEIVMDRSAAV
EEEEEEECCCCHHHHCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC
GSIGVVASLSRQEAADNQGRRSYEIVSSNAPNKRPDPSTEEGRTAIQKDIDAIEEVFIAD
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAAGRRVSADRVRSDFGRGAMLSATRAIEAGMADRIGTLEGVLTEGSGRTRKTGAGRSAH
HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHH
AAAEIETRRRAAMRN
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA