| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yoaT [H]
Identifier: 99081425
GI number: 99081425
Start: 1692970
End: 1693896
Strand: Direct
Name: yoaT [H]
Synonym: TM1040_1584
Alternate gene names: 99081425
Gene position: 1692970-1693896 (Clockwise)
Preceding gene: 99081421
Following gene: 99081427
Centisome position: 52.89
GC content: 59.76
Gene sequence:
>927_bases ATGACTGAACCTGCCCAAAATCCAATCCCCATGAATCGCACGCGCCGTCTTGAACGCGCCCTTGGCGACTGGTGCCGCGC GCGCCTGCCACATTACCTGTCTGAACTGGTGATGTTCACGCTCAAACAAGGTTGGGCGGCAATCTTCGGGATCTTGCTCC TGGGCGGGCTCTTGGTCTCCAGCCGCATCTGGCAGGCAGATTGGGCGCTGGCGCGCTATGATGCGCTGCTGATCTATGCG CTCGGGCTGCAGGCAGTGTTCCTGATCACCGGCATGGAAAGCACCCGCGAAGCGCGGGTGATCTTGTTGTTTCATCTCAC CGGCACGATCATGGAAATCTTCAAGGTTCAGGCCGGAAGCTGGGCCTATCCGGGCGCGGGCGTCCTGAAGCTCTGGGGCG TTCCGCTGTTTTCGGGTTTTATGTATGCGTCAGTAGGGTCTTACATGGCGCGGGTCATCCGGCTGTTTGACATGCGTTTT GCGCCCTACCCGCCGACATGGATGGCAAGCTGCCTCGCGGTCCTGATCTATGTGAATTTCTTCAGCCACCACTTCCTGCC CGACATACGGCTCGCGCTCTTTGTTGCAACGGTGGTGATCTTTATCCGCACCCGCATCTGGTTTTACATCGGCGGCCATG CCTATTGGATGCCCTTGCCGCTAGCGGCCTTCCTGTCGAGTTTTTTCCTCTGGGTGGCCGAGAACGTGGGCACGCGTACG CGAACCTGGCTCTATGCGGGACAGGACAGCGACCACTGGGTCAGCTTGGCCAAGATGGGCAGCTGGTACCTGCTGCTCTA TGTGAGCTTTGTCACCGTGACCCTCGTGGTGCGCGATGCACTGTCGGCAGAGGCCTTCCGGCCGTCTGGCCCATCCGGGA TCAGACGAAACCCCGCCAGCGCAGCACAACCACCATCAGCACAATAA
Upstream 100 bases:
>100_bases ATAGGCTGCCGCAGTCCGGGAATGCAAATCCTCGCCGTGCGGTGACTGATCTTGGAGTTTCGCGTGGACTTGATGAGACT TTTCCCGTCATTTCTCGGTC
Downstream 100 bases:
>100_bases CACAGAGGATCGCAAAGGCAGAGGTCGCAGCCATGTCCAAAAGCCGCCCCTTGCGCCGGTCCTTGAGGTCGAGCTCTGTC AGATAAGCCCTGAGACGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MTEPAQNPIPMNRTRRLERALGDWCRARLPHYLSELVMFTLKQGWAAIFGILLLGGLLVSSRIWQADWALARYDALLIYA LGLQAVFLITGMESTREARVILLFHLTGTIMEIFKVQAGSWAYPGAGVLKLWGVPLFSGFMYASVGSYMARVIRLFDMRF APYPPTWMASCLAVLIYVNFFSHHFLPDIRLALFVATVVIFIRTRIWFYIGGHAYWMPLPLAAFLSSFFLWVAENVGTRT RTWLYAGQDSDHWVSLAKMGSWYLLLYVSFVTVTLVVRDALSAEAFRPSGPSGIRRNPASAAQPPSAQ
Sequences:
>Translated_308_residues MTEPAQNPIPMNRTRRLERALGDWCRARLPHYLSELVMFTLKQGWAAIFGILLLGGLLVSSRIWQADWALARYDALLIYA LGLQAVFLITGMESTREARVILLFHLTGTIMEIFKVQAGSWAYPGAGVLKLWGVPLFSGFMYASVGSYMARVIRLFDMRF APYPPTWMASCLAVLIYVNFFSHHFLPDIRLALFVATVVIFIRTRIWFYIGGHAYWMPLPLAAFLSSFFLWVAENVGTRT RTWLYAGQDSDHWVSLAKMGSWYLLLYVSFVTVTLVVRDALSAEAFRPSGPSGIRRNPASAAQPPSAQ >Mature_307_residues TEPAQNPIPMNRTRRLERALGDWCRARLPHYLSELVMFTLKQGWAAIFGILLLGGLLVSSRIWQADWALARYDALLIYAL GLQAVFLITGMESTREARVILLFHLTGTIMEIFKVQAGSWAYPGAGVLKLWGVPLFSGFMYASVGSYMARVIRLFDMRFA PYPPTWMASCLAVLIYVNFFSHHFLPDIRLALFVATVVIFIRTRIWFYIGGHAYWMPLPLAAFLSSFFLWVAENVGTRTR TWLYAGQDSDHWVSLAKMGSWYLLLYVSFVTVTLVVRDALSAEAFRPSGPSGIRRNPASAAQPPSAQ
Specific function: Unknown
COG id: COG3739
COG function: function code S; Uncharacterized integral membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008535 [H]
Pfam domain/function: PF05675 DUF817 [H]
EC number: NA
Molecular weight: Translated: 34787; Mature: 34656
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPAQNPIPMNRTRRLERALGDWCRARLPHYLSELVMFTLKQGWAAIFGILLLGGLLVS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRIWQADWALARYDALLIYALGLQAVFLITGMESTREARVILLFHLTGTIMEIFKVQAGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCC WAYPGAGVLKLWGVPLFSGFMYASVGSYMARVIRLFDMRFAPYPPTWMASCLAVLIYVNF CCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH FSHHFLPDIRLALFVATVVIFIRTRIWFYIGGHAYWMPLPLAAFLSSFFLWVAENVGTRT HHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCEEEEHHHHHHHHHHHHHHHHHHCCCCCE RTWLYAGQDSDHWVSLAKMGSWYLLLYVSFVTVTLVVRDALSAEAFRPSGPSGIRRNPAS EEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AAQPPSAQ CCCCCCCC >Mature Secondary Structure TEPAQNPIPMNRTRRLERALGDWCRARLPHYLSELVMFTLKQGWAAIFGILLLGGLLVS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRIWQADWALARYDALLIYALGLQAVFLITGMESTREARVILLFHLTGTIMEIFKVQAGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCC WAYPGAGVLKLWGVPLFSGFMYASVGSYMARVIRLFDMRFAPYPPTWMASCLAVLIYVNF CCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH FSHHFLPDIRLALFVATVVIFIRTRIWFYIGGHAYWMPLPLAAFLSSFFLWVAENVGTRT HHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCEEEEHHHHHHHHHHHHHHHHHHCCCCCE RTWLYAGQDSDHWVSLAKMGSWYLLLYVSFVTVTLVVRDALSAEAFRPSGPSGIRRNPAS EEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AAQPPSAQ CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]