Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081404

Identifier: 99081404

GI number: 99081404

Start: 1669877

End: 1670569

Strand: Reverse

Name: 99081404

Synonym: TM1040_1563

Alternate gene names: NA

Gene position: 1670569-1669877 (Counterclockwise)

Preceding gene: 99081405

Following gene: 99081394

Centisome position: 52.19

GC content: 60.89

Gene sequence:

>693_bases
ATGCTGGATTGGTTTGCAAAACGAAATGCCTCCCCGATGGCAGAGGCGTTCACAACCGAATTTCCGATGGTCGCAACTGG
CCAGGCAGGGTTTCTCTCAGGGACCATGGTCGCGACCGCAACCGGCTGGCGCCCCGTCGAAGCGCTCTCCATCGGTGACG
AGGTTCTGACCTTCGATCACGGCATGCGTCCGATCAAATCCATTACCCGTCGCACCCTGGTTCTGGGCGACACCGCCTGC
GCCCAGGAAATGGCGCCGATCTATATCCCCCGTGATGCACTGGGCAACCGCAACCCGATGTGGGTCAAGCCAGAGCAGGG
CATCCTCCTCGAGCATGATCTTCTTGAAGACAGCCTTGGTGATCCCTTCGCCGTTGTTCCGGCTTGCGCACTTGAAGGCT
ACCGCGGTATTGCCCGCGCCCCGCAGCAGGTGACCATGCAGACCGTGGTGCTTACCTTTGACGAGGACGAAGTGCTCTAT
ATCGAAGCGGGCGTGCTGGCCTATTGCCCGGCAGATCACGACCTGATGCACTACTGCGTGACCGCCGCCTCCGAAGAGCT
CTACACAATCCTCTCCGCCGCCGAGGCGCGTGAGCTGGTCATCGACATGATCACCGAAGACAGCTTCTGGACCCAAGGGG
CGGTTGCTGGCAGCGGTGGCACAGGTGAGCCGCAGTATACGACCTTCGCCTGA

Upstream 100 bases:

>100_bases
CCCAGGCCCGACCGATTTGCTACAAAGGCTTCACGGAACGGCGATTGGAGCTTCGAGCCCCTGAGGTCCGGAGCAACATC
AAGGTCGAAAGGACAGGAAC

Downstream 100 bases:

>100_bases
TCCCCAAACGCTCTCTCTCACACCTCCTGAGCAAACACCCCGCGCGCCGCTTGGTCGGCTGCGGGGTGTTTTCATGTTGG
AGCACGCGCTTGTTTTCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITRRTLVLGDTAC
AQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLY
IEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA

Sequences:

>Translated_230_residues
MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITRRTLVLGDTAC
AQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLY
IEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA
>Mature_230_residues
MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDHGMRPIKSITRRTLVLGDTAC
AQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLGDPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLY
IEAGVLAYCPADHDLMHYCVTAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25003; Mature: 25003

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDH
CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCCEEECCC
GMRPIKSITRRTLVLGDTACAQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLG
CCHHHHHHHHHEEEECCHHHHHHCCCEEECHHHCCCCCCEEECCCCCEEEEHHHHHHHCC
DPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLYIEAGVLAYCPADHDLMHYCV
CCCHHHHHHHHHCCHHHHCCCHHEEEEEEEEEECCCCEEEEECCEEEECCCCHHHHHHHH
TAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEECC
>Mature Secondary Structure
MLDWFAKRNASPMAEAFTTEFPMVATGQAGFLSGTMVATATGWRPVEALSIGDEVLTFDH
CCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCCEEECCC
GMRPIKSITRRTLVLGDTACAQEMAPIYIPRDALGNRNPMWVKPEQGILLEHDLLEDSLG
CCHHHHHHHHHEEEECCHHHHHHCCCEEECHHHCCCCCCEEECCCCCEEEEHHHHHHHCC
DPFAVVPACALEGYRGIARAPQQVTMQTVVLTFDEDEVLYIEAGVLAYCPADHDLMHYCV
CCCHHHHHHHHHCCHHHHCCCHHEEEEEEEEEECCCCEEEEECCEEEECCCCHHHHHHHH
TAASEELYTILSAAEARELVIDMITEDSFWTQGAVAGSGGTGEPQYTTFA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA