Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081399

Identifier: 99081399

GI number: 99081399

Start: 1663752

End: 1663964

Strand: Direct

Name: 99081399

Synonym: TM1040_1558

Alternate gene names: NA

Gene position: 1663752-1663964 (Clockwise)

Preceding gene: 99081398

Following gene: 99081400

Centisome position: 51.98

GC content: 57.28

Gene sequence:

>213_bases
ATGCCCAAACGCTTTCGCCTGACCCGCCGCTTTCCCGTCGCGATGACGGAGGATGGGTTTCGCAGGCTCAAACGTTTTGC
CCAAGAGGCCGGACTGGACGAGGGAGAAGCGTTGTCCTTTCTGTTCGAGAATTTCGACAGCGTGACCAACCACGAGAACC
TGACCCACCGGTTGCGGCTGTTCAATGCCGAATTGGAGGATCGAAAACGCTAG

Upstream 100 bases:

>100_bases
AGTTCTGATCGCGCTGAGCGACACGACATGGGATGTGTCCCGTTTGGGGCGCATCCACCCTTGGCCGCCGGGGCGCATTT
GGAATTGAGAGGATCCGAAT

Downstream 100 bases:

>100_bases
CGCAGGGCACGCACCGCCACGCGCCCAAGGGGGAGAGAGATGAGCGCAGAGCTGGATTTTCGCACATCATCGGTGTGGAT
GACCGACGAGCATAAGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MPKRFRLTRRFPVAMTEDGFRRLKRFAQEAGLDEGEALSFLFENFDSVTNHENLTHRLRLFNAELEDRKR

Sequences:

>Translated_70_residues
MPKRFRLTRRFPVAMTEDGFRRLKRFAQEAGLDEGEALSFLFENFDSVTNHENLTHRLRLFNAELEDRKR
>Mature_69_residues
PKRFRLTRRFPVAMTEDGFRRLKRFAQEAGLDEGEALSFLFENFDSVTNHENLTHRLRLFNAELEDRKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8429; Mature: 8297

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRFRLTRRFPVAMTEDGFRRLKRFAQEAGLDEGEALSFLFENFDSVTNHENLTHRLRL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
FNAELEDRKR
HCCCHHCCCC
>Mature Secondary Structure 
PKRFRLTRRFPVAMTEDGFRRLKRFAQEAGLDEGEALSFLFENFDSVTNHENLTHRLRL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
FNAELEDRKR
HCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA