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The map label for this gene is yfdE [H]

Identifier: 99081372

GI number: 99081372

Start: 1634991

End: 1636193

Strand: Direct

Name: yfdE [H]

Synonym: TM1040_1531

Alternate gene names: 99081372

Gene position: 1634991-1636193 (Clockwise)

Preceding gene: 99081371

Following gene: 99081373

Centisome position: 51.08

GC content: 61.18

Gene sequence:

>1203_bases
ATGATGGCCGCATCTGATACCACCGCCCCCGCGCGTTTGCCCCACGGTGCCCTCAAAGGCGTAAAAGTGCTGGATCTCTC
GCGCATCCTGGCTGGCCCAACCGCAACGCAACTTTTGGGAGATCTGGGCGCCGATGTGATCAAGGTCGAAAACCCAACCA
CGGGCGGCGACGACACCCGTCAATGGGGCAAGAGCGTCGCCGAAGATGCTGATCTCACGCCCTATTTCATGGCCGCCAAC
CGCAACAAACGCTCGCTCGCGCTGGATATTTCTGCCCCCGAAGGACAGGCCATCATCCGACGCCTCGCCGCGCAAGCAGA
CGTCTTGATCGAGAACTTCAAACCGGGCGGGCTCGCGAAATATGGACTTGATTACGCCTCCCTGCGCGAAAGCTGCCCAC
ATCTGGTCTATGCGTCGATTTCCGGCTATGGCCAGACCGGCCCGAACCGTGCAAAGCCCGGCTATGATCTGATGGCACAG
GGCTATGGCGGTATCATGTCCCTTACCGGCGACCCCGAAGGCGCGCCTGTCAAGGTCGGGGTCGGCATCGCGGATGTGAT
GTGCGGAATGTATGCGACCATCGGCATTCTCTCGGCATTGCGCCACCGCGATCTCACGGGCGAAGGCCAGCAGGTCGAAC
TTGCCCTGGTGGATGCGCAGATCGCCTGGCTGATCAACGAAGGTGTGAGTTACCTCAATACCGGCCAGAAACCCGTGCGA
CGCGGCAATGAGCACCCCTCGATCATGCCCTATGGCACCTATGAAACCCGCGACGGCCATGTGATCCTCGCAGTTGGGAA
TGATAGTCAGTTTCGCCGATTTATGGCATTCCTTGCCCTCGAGGGATTGGCCGAAGATCCCCGATTTGCCACCAATCCGG
CCCGTCTTGAGCATCGCGGCGCACTCAATGATATCCTGATCCCGGCGCTACAGCGCTATCGCACCGATGAGGTCATTGCC
GCGATGGAAGCCGCCAAGGTGCCCGTCGGCCCGGTCAAGACACTCGATCAGGTCTTTGAGACCGATCAGGTTGCCGCGCG
GGACATGGTGGTGACGATGCAGGCCGGTGACACCGAGGTGCGGCTCTTGGGCAATCCGCTCAAGTTCTCGCGCACCCCCG
TAACCTACCGCAAGGCTCCGCCCAGATGCGGGGCGGACAGCACGGAGATTCTCGCGTCTGACGCGCCCTTTGAGACCGAC
TGA

Upstream 100 bases:

>100_bases
CATCGGGTGCAGAACCGAACGGAGCTGCGCGCCGCGCTGGAGGCGGCTCAATCGGCCTCCACCTTCACCGTGATCGCTGC
GGAAATCGACAAGGAGTCCT

Downstream 100 bases:

>100_bases
ACGGATCCCGCACAGACGTGGCCCAGAGGGCCGCCTCGCAATGTTACAAAAGCCTGCGCGATTTTCTGCCCGCGCTGCAT
CCACCAGCACAAAGCACCGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MMAASDTTAPARLPHGALKGVKVLDLSRILAGPTATQLLGDLGADVIKVENPTTGGDDTRQWGKSVAEDADLTPYFMAAN
RNKRSLALDISAPEGQAIIRRLAAQADVLIENFKPGGLAKYGLDYASLRESCPHLVYASISGYGQTGPNRAKPGYDLMAQ
GYGGIMSLTGDPEGAPVKVGVGIADVMCGMYATIGILSALRHRDLTGEGQQVELALVDAQIAWLINEGVSYLNTGQKPVR
RGNEHPSIMPYGTYETRDGHVILAVGNDSQFRRFMAFLALEGLAEDPRFATNPARLEHRGALNDILIPALQRYRTDEVIA
AMEAAKVPVGPVKTLDQVFETDQVAARDMVVTMQAGDTEVRLLGNPLKFSRTPVTYRKAPPRCGADSTEILASDAPFETD

Sequences:

>Translated_400_residues
MMAASDTTAPARLPHGALKGVKVLDLSRILAGPTATQLLGDLGADVIKVENPTTGGDDTRQWGKSVAEDADLTPYFMAAN
RNKRSLALDISAPEGQAIIRRLAAQADVLIENFKPGGLAKYGLDYASLRESCPHLVYASISGYGQTGPNRAKPGYDLMAQ
GYGGIMSLTGDPEGAPVKVGVGIADVMCGMYATIGILSALRHRDLTGEGQQVELALVDAQIAWLINEGVSYLNTGQKPVR
RGNEHPSIMPYGTYETRDGHVILAVGNDSQFRRFMAFLALEGLAEDPRFATNPARLEHRGALNDILIPALQRYRTDEVIA
AMEAAKVPVGPVKTLDQVFETDQVAARDMVVTMQAGDTEVRLLGNPLKFSRTPVTYRKAPPRCGADSTEILASDAPFETD
>Mature_400_residues
MMAASDTTAPARLPHGALKGVKVLDLSRILAGPTATQLLGDLGADVIKVENPTTGGDDTRQWGKSVAEDADLTPYFMAAN
RNKRSLALDISAPEGQAIIRRLAAQADVLIENFKPGGLAKYGLDYASLRESCPHLVYASISGYGQTGPNRAKPGYDLMAQ
GYGGIMSLTGDPEGAPVKVGVGIADVMCGMYATIGILSALRHRDLTGEGQQVELALVDAQIAWLINEGVSYLNTGQKPVR
RGNEHPSIMPYGTYETRDGHVILAVGNDSQFRRFMAFLALEGLAEDPRFATNPARLEHRGALNDILIPALQRYRTDEVIA
AMEAAKVPVGPVKTLDQVFETDQVAARDMVVTMQAGDTEVRLLGNPLKFSRTPVTYRKAPPRCGADSTEILASDAPFETD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=38.8297872340425, Blast_Score=273, Evalue=3e-73,
Organism=Homo sapiens, GI300863124, Length=402, Percent_Identity=36.81592039801, Blast_Score=259, Evalue=4e-69,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=35.1063829787234, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI13376042, Length=402, Percent_Identity=32.8358208955224, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=28.0104712041885, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI42794625, Length=382, Percent_Identity=28.0104712041885, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI266458393, Length=288, Percent_Identity=30.2083333333333, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=29.9242424242424, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=35.4609929078014, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI266458395, Length=141, Percent_Identity=35.4609929078014, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI87082093, Length=355, Percent_Identity=36.9014084507042, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788717, Length=407, Percent_Identity=29.7297297297297, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1786222, Length=395, Percent_Identity=25.5696202531646, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=25.7225433526012, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=331, Percent_Identity=28.0966767371601, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648431, Length=375, Percent_Identity=41.8666666666667, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24585488, Length=266, Percent_Identity=30.0751879699248, Blast_Score=106, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42878; Mature: 42878

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAASDTTAPARLPHGALKGVKVLDLSRILAGPTATQLLGDLGADVIKVENPTTGGDDTR
CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCCHHH
QWGKSVAEDADLTPYFMAANRNKRSLALDISAPEGQAIIRRLAAQADVLIENFKPGGLAK
HHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
YGLDYASLRESCPHLVYASISGYGQTGPNRAKPGYDLMAQGYGGIMSLTGDPEGAPVKVG
HCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCEEEC
VGIADVMCGMYATIGILSALRHRDLTGEGQQVELALVDAQIAWLINEGVSYLNTGQKPVR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHCHHHHHCCCHHHH
RGNEHPSIMPYGTYETRDGHVILAVGNDSQFRRFMAFLALEGLAEDPRFATNPARLEHRG
CCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
ALNDILIPALQRYRTDEVIAAMEAAKVPVGPVKTLDQVFETDQVAARDMVVTMQAGDTEV
CHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCEE
RLLGNPLKFSRTPVTYRKAPPRCGADSTEILASDAPFETD
EEECCCCCCCCCCCEECCCCCCCCCCCHHEEECCCCCCCC
>Mature Secondary Structure
MMAASDTTAPARLPHGALKGVKVLDLSRILAGPTATQLLGDLGADVIKVENPTTGGDDTR
CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCCHHH
QWGKSVAEDADLTPYFMAANRNKRSLALDISAPEGQAIIRRLAAQADVLIENFKPGGLAK
HHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
YGLDYASLRESCPHLVYASISGYGQTGPNRAKPGYDLMAQGYGGIMSLTGDPEGAPVKVG
HCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCEEEC
VGIADVMCGMYATIGILSALRHRDLTGEGQQVELALVDAQIAWLINEGVSYLNTGQKPVR
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHCHHHHHCCCHHHH
RGNEHPSIMPYGTYETRDGHVILAVGNDSQFRRFMAFLALEGLAEDPRFATNPARLEHRG
CCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
ALNDILIPALQRYRTDEVIAAMEAAKVPVGPVKTLDQVFETDQVAARDMVVTMQAGDTEV
CHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCEE
RLLGNPLKFSRTPVTYRKAPPRCGADSTEILASDAPFETD
EEECCCCCCCCCCCEECCCCCCCCCCCHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]